Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c08
         (787 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY383627-1|AAR26431.1|  109|Homo sapiens gametogenetin-binding p...    34   0.67 
AY383626-1|AAR26430.1|   88|Homo sapiens gametogenetin 1 binding...    30   8.2  
AJ000517-1|CAA04154.1|  892|Homo sapiens spinocerebellar ataxia ...    30   8.2  
AF032105-1|AAC39765.1|  892|Homo sapiens ataxin-7 protein.             30   8.2  
AF032103-1|AAC19163.1|  789|Homo sapiens ataxin-7 protein.             30   8.2  

>AY383627-1|AAR26431.1|  109|Homo sapiens gametogenetin-binding
           protein 1 variant protein.
          Length = 109

 Score = 33.9 bits (74), Expect = 0.67
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +3

Query: 258 CVIDVYGLQ*PLNTRWAVSSSTHLSNKKIKKLLKWQFRNILFTFNSNSSREFLVR*IFIN 437
           CV  +  LQ P N  +  + +      ++KKLL  Q  + L+   S   RE L R     
Sbjct: 11  CVPGIVALQSPPNKAFRSTDTVGFLESELKKLLGMQQESRLWKLGSQEGRELLTR----P 66

Query: 438 QFRAIDSAFQCLSKRL-H*PGPFSIVQ 515
           +   ++     + +RL H P P S+ Q
Sbjct: 67  EITVVEGEGYEVQRRLRHLPSPISVAQ 93


>AY383626-1|AAR26430.1|   88|Homo sapiens gametogenetin 1 binding
           protein 1 protein.
          Length = 88

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 258 CVIDVYGLQ*PLNTRWAVSSSTHLSNKKIKKLLKWQFRNILFTFNSNSSREFLVR 422
           CV  +  LQ P N  +  + +      ++KKLL  Q  + L+   S   RE L R
Sbjct: 11  CVPGIVALQSPPNKAFRSTDTVGFLESELKKLLGMQQESRLWKLGSQEGRELLTR 65


>AJ000517-1|CAA04154.1|  892|Homo sapiens spinocerebellar ataxia 7
           protein.
          Length = 892

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +2

Query: 599 APISPPPWAVRSSPSSKTPATRPAS 673
           API PPP  V  SP    PAT PAS
Sbjct: 466 APIDPPP--VHESPHPPLPATEPAS 488


>AF032105-1|AAC39765.1|  892|Homo sapiens ataxin-7 protein.
          Length = 892

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +2

Query: 599 APISPPPWAVRSSPSSKTPATRPAS 673
           API PPP  V  SP    PAT PAS
Sbjct: 466 APIDPPP--VHESPHPPLPATEPAS 488


>AF032103-1|AAC19163.1|  789|Homo sapiens ataxin-7 protein.
          Length = 789

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +2

Query: 599 APISPPPWAVRSSPSSKTPATRPAS 673
           API PPP  V  SP    PAT PAS
Sbjct: 363 APIDPPP--VHESPHPPLPATEPAS 385


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,330,861
Number of Sequences: 237096
Number of extensions: 2413262
Number of successful extensions: 5194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5194
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)