Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c08
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ... 37 0.019
AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical ... 34 0.13
AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical ... 34 0.13
Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 29 3.8
U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical pr... 29 3.8
U97007-5|AAB52295.1| 564|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 29 3.8
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 29 3.8
Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr... 29 5.0
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 29 5.0
AL032675-1|CAA21779.1| 963|Caenorhabditis elegans Hypothetical ... 29 5.0
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 6.6
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 6.6
AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical... 28 8.7
>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
protein F53H1.4a protein.
Length = 1370
Score = 36.7 bits (81), Expect = 0.019
Identities = 24/88 (27%), Positives = 38/88 (43%)
Frame = -3
Query: 782 KYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKW 603
K E E + ++ + A +KK KN+G+ +F +K SP+S FSP +KW
Sbjct: 272 KLKEKEEKLKEKEEKAARKAEKKE--KNNGTMDKFLKKDTGSPSSKNAPLFSP----SKW 325
Query: 602 APTCLNRETKPYYEAWVNTKLAAVSRGC 519
+ K +AW L + C
Sbjct: 326 GEKRIAVGVKKMEDAWKRRDLELYNEAC 353
>AF045641-4|AAO91715.1| 332|Caenorhabditis elegans Hypothetical
protein F53H1.4b protein.
Length = 332
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = -3
Query: 782 KYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKW 603
K E E + ++ + A +KK KN+G+ +F +K SP+S FSP +KW
Sbjct: 236 KLKEKEEKLKEKEEKAARKAEKKE--KNNGTMDKFLKKDTGSPSSKNAPLFSP----SKW 289
Query: 602 APTCLNRETKPYYEAW 555
+ K +AW
Sbjct: 290 GEKRIAVGVKKMEDAW 305
>AF045641-3|AAO91716.1| 368|Caenorhabditis elegans Hypothetical
protein F53H1.4c protein.
Length = 368
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = -3
Query: 782 KYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKW 603
K E E + ++ + A +KK KN+G+ +F +K SP+S FSP +KW
Sbjct: 272 KLKEKEEKLKEKEEKAARKAEKKE--KNNGTMDKFLKKDTGSPSSKNAPLFSP----SKW 325
Query: 602 APTCLNRETKPYYEAW 555
+ K +AW
Sbjct: 326 GEKRIAVGVKKMEDAW 341
>Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical
protein H39E23.3 protein.
Length = 746
Score = 29.1 bits (62), Expect = 3.8
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Frame = -3
Query: 764 RREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVA---KWAPT 594
+RE+ +P ++ +KK +K + + A ++ S P TE A K AP
Sbjct: 228 KRESDKPKTESADSEKKAPVKREADKPKTESADSEKKAPAKRESDKPKTESADSEKKAP- 286
Query: 593 CLNRET-KPYYEAWVNTKLAAVSRGCDLNDRERTRLMETFRKA-LECRIDSPE 441
+ RE KP E+ + K A R +D+ +T ++ +KA ++ D P+
Sbjct: 287 -VKREADKPKTESADSEKKAPAKRE---SDKPKTESADSEKKAPVKREADKPK 335
Score = 28.7 bits (61), Expect = 5.0
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Frame = -3
Query: 764 RREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVA---KWAPT 594
+REA +P ++ +KK K + + A ++ S P TE A K AP
Sbjct: 188 KREADKPKTESADSEKKAPAKREADKPKTESADSEKKAPAKRESDKPKTESADSEKKAP- 246
Query: 593 CLNRET-KPYYEAWVNTKLAAVSRGCDLNDRERTRLMETFRKA-LECRIDSPE 441
+ RE KP E+ + K A R +D+ +T ++ +KA ++ D P+
Sbjct: 247 -VKREADKPKTESADSEKKAPAKRE---SDKPKTESADSEKKAPVKREADKPK 295
Score = 28.3 bits (60), Expect = 6.6
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = -3
Query: 764 RREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVA---KWAPT 594
+REA +P ++ +KK K + + A ++ + P TE A K AP
Sbjct: 168 KREADKPKTESADSEKKAPAKREADKPKTESADSEKKAPAKREADKPKTESADSEKKAPA 227
Query: 593 CLNRET-KPYYEAWVNTKLAAVSRGCDLNDRERTRLMETFRKA 468
RE+ KP E+ + K A V R D+ +T ++ +KA
Sbjct: 228 --KRESDKPKTESADSEKKAPVKREA---DKPKTESADSEKKA 265
Score = 28.3 bits (60), Expect = 6.6
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Frame = -3
Query: 764 RREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVA---KWAPT 594
+REA P ++ +KK K + + AS ++ + P TE A K AP
Sbjct: 348 KREADPPKTESADSEKKAPAKREADKPKTESADSEKKASAKREADKPKTESADSEKKAP- 406
Query: 593 CLNRET-KPYYEAWVNTKLAAVSRGCD 516
+ RE KP E+ + K A V R D
Sbjct: 407 -VKREADKPKTESADSEKKAPVKREAD 432
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -3
Query: 785 SKYTETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVA- 609
S+ + +REA +P ++ +KK +K + + A +++ + P TE A
Sbjct: 381 SEKKASAKREADKPKTESADSEKKAPVKREADKPKTESADSEKKAPVKREADPPKTESAD 440
Query: 608 --KWAPTCLNRETKP 570
K APT RE P
Sbjct: 441 SEKKAPT--KREADP 453
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -3
Query: 767 ERREAKR--PPEIASGVDK--KPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKWA 600
E RE +R PP A+ K P R+R R + S+R+ S SPP A+
Sbjct: 258 EPREVRRSPPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESASPPRRRARII 317
Query: 599 PTCLNRETKP 570
P R KP
Sbjct: 318 PRYECRAQKP 327
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -3
Query: 767 ERREAKR--PPEIASGVDK--KPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKWA 600
E RE +R PP A+ K P R+R R + S+R+ S SPP A+
Sbjct: 258 EPREVRRSPPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESASPPRRRARII 317
Query: 599 PTCLNRETKP 570
P R KP
Sbjct: 318 PRYECRAQKP 327
>U97017-2|AAB52359.1| 281|Caenorhabditis elegans Hypothetical
protein F47B3.4 protein.
Length = 281
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = -3
Query: 767 ERREAKRPPEIASGV--DKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKWAPT 594
E+ K+P E A +KK KN GS++ + + S S K S P E AK P
Sbjct: 80 EKEVEKKPDEPAKSKKSEKKEKSKNEGSKKEESKDKEKSKKSEDKKSEDPKKEDAK-KPD 138
Query: 593 CLNRET--KPYYEAWVNTK 543
++T KP E+ V K
Sbjct: 139 VKGKDTFKKPVDESAVAPK 157
>U97007-5|AAB52295.1| 564|Caenorhabditis elegans Hypothetical
protein ZC196.5 protein.
Length = 564
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = -3
Query: 746 PPEIASGVDKKP-DIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKWAPTCLNRETKP 570
PP+I G K+ ++KN + + Q A+ ++RK S P E ++PT + T P
Sbjct: 4 PPKIKKGKKKRSQEVKNDRKKEFSKLDQPANYKAIRKISPVPKKETNIYSPTA--KSTAP 61
Query: 569 YYEAWVNTKLAAVSRGCDLNDRERTRL 489
+ + + V + ++ + +L
Sbjct: 62 IHREFKKQQNYGVGKAVPVSFNDPKKL 88
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -3
Query: 767 ERREAKR--PPEIASGVDK--KPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKWA 600
E RE +R PP A+ K P R+R R + S+R+ S SPP A+
Sbjct: 258 EPREVRRSPPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESASPPRRRARII 317
Query: 599 PTCLNRETKP 570
P R KP
Sbjct: 318 PRYECRAQKP 327
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -3
Query: 767 ERREAKR--PPEIASGVDK--KPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKWA 600
E RE +R PP A+ K P R+R R + S+R+ S SPP A+
Sbjct: 258 EPREVRRSPPPRRAASPRKASSPSAPAKNDRKRERSPSGSVAPSVRRESASPPRRRARII 317
Query: 599 PTCLNRETKP 570
P R KP
Sbjct: 318 PRYECRAQKP 327
>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical protein
F55B11.1 protein.
Length = 1358
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 672 EAGRVAGVFEEGELLTAHGGGEMG 601
+AG + V+ +G +L +HGG EMG
Sbjct: 1043 QAGALVLVYTDGSVLVSHGGMEMG 1066
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical
protein C34F11.5 protein.
Length = 894
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -3
Query: 782 KYTETERREAKRP--PEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVA 609
K +R + RP P I V KK +K ++ +RK++ +RKAS + T+ A
Sbjct: 643 KTKRVKRGKFVRPLMPRIPKFVAKKKKLKKVDGKKVLKRKEIVLTLKVRKASTAKKTKKA 702
>AL032675-1|CAA21779.1| 963|Caenorhabditis elegans Hypothetical
protein VT23B5.1 protein.
Length = 963
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -3
Query: 743 PEIASGVDK-KPDIKNSGSRRRFRRKQVASPASLRKASFSP----PTEVAKWAPTCLNRE 579
PE AS ++K K D+ G R RRK + + F P P+ A+ A ++ +
Sbjct: 844 PERASKLEKFKLDL-TEGPTTRMRRKLIPNRNFYHIYPFRPHLEAPSAKAQRAKVAISFD 902
Query: 578 TKPYYE 561
+KPYYE
Sbjct: 903 SKPYYE 908
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 219 QYSCNGCPTLQTETHYCFTAEI 154
QY C+GC L ET C AE+
Sbjct: 2117 QYICDGCIALNVETLMCLLAEM 2138
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 219 QYSCNGCPTLQTETHYCFTAEI 154
QY C+GC L ET C AE+
Sbjct: 2145 QYICDGCIALNVETLMCLLAEM 2166
>AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical
protein Y39G10AR.17 protein.
Length = 549
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 518 DLNDRERTRLMETFRKALECRIDSPELVYEDLTDE 414
D + + + LMETF+ L +ID + +DL+D+
Sbjct: 253 DCSKKLKNELMETFKDQLLSQIDRKTKIRDDLSDQ 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,977,219
Number of Sequences: 27780
Number of extensions: 361818
Number of successful extensions: 919
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -