Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c08
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -2

Query: 663 RVAGVFEEGELLTAHGGGEMGAYLPQSRNKTVLRSLGEHETGGRVERLRFER*RKD 496
           ++ G+    E     G G +GAY P+   K   +   +    G+  + +  + RKD
Sbjct: 180 QLQGISTPVEAHLRKGRGAIGAYGPEKGPKVPEKKKEDEIDEGKESKTKLSQWRKD 235


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/52 (23%), Positives = 20/52 (38%)
 Frame = -3

Query: 746 PPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRKASFSPPTEVAKWAPTC 591
           PP   +    +P  +N G   +   K++ S  SL     +    V   + TC
Sbjct: 529 PPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASSTC 580


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 769  PSGGKRNDRPRLRQA 725
            P  G R+DRP L +A
Sbjct: 1873 PGNGDRSDRPELSEA 1887


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 769  PSGGKRNDRPRLRQA 725
            P  G R+DRP L +A
Sbjct: 1869 PGNGDRSDRPELSEA 1883


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 78   NRRRPQCRLVVGPLASPRG*VPP 146
            ++RRP  R  +G +A P   +PP
Sbjct: 1633 DKRRPDLRDELGYIAPPNRKLPP 1655


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +1

Query: 76  EIDEDHNVDWW*DLL 120
           ++ E+   DWW D++
Sbjct: 332 KLGEEEKADWWKDIM 346


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +1

Query: 76  EIDEDHNVDWW*DLL 120
           ++ E+   DWW D++
Sbjct: 332 KLGEEEKADWWKDIM 346


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +1

Query: 76  EIDEDHNVDWW*DLL 120
           ++ E+   DWW D++
Sbjct: 332 KLGEEEKADWWKDIM 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,692
Number of Sequences: 438
Number of extensions: 4404
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)