Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c06
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    28   1.7  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   5.3  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   7.0  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    25   9.3  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/53 (16%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -2

Query: 250 VKHLEYKHLDLKHGIKRHQIKRIKSNFNTGRSRITVSIK--PNHTSVYINYVH 98
           ++ L+YKH+ L   I+   +  +   F+  ++++ + +   P++  ++++ +H
Sbjct: 197 IRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQLKMFVHYLPSYYHLHVHILH 249


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -2

Query: 250 VKHLEYKHLD---LKHGIKRHQIKRIKSNFNTGRSRITVSIKPNHTSVYIN 107
           VK LEY +++   L   + R +I+ ++ +   GR+ + V ++ +    YI+
Sbjct: 34  VKLLEYDNIEGMVLLSELSRRRIRSVQKHIRVGRNEVVVVLRVDKEKGYID 84


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 277 SSTIDHAIPVKHLEYKHLDLKHGIKRHQIKRIKSNFNTGRSRITVSIKPNHTS 119
           S+ I + +P   L+  +         H +  +KS +NT   R + S+ PN T+
Sbjct: 474 SANIPNLLPTSELDSSNAPHSQSAATHDLNDVKSYYNT---RSSHSVVPNPTN 523


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 446 NPYFSCLRTRIMDFLFLFGSCTILLFYVFIILHNNICNETYSVDF 580
           NPYFS       D L L+G C+   + + +  ++  C    SVDF
Sbjct: 236 NPYFSNYNLTNDDILNLYGICS---YEIALQDYSEFCKLFNSVDF 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,573
Number of Sequences: 5004
Number of extensions: 64261
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)