Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c02
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    30   0.48 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   1.9  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    28   1.9  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    27   3.4  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    27   4.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.5  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   5.9  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   7.8  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   7.8  

>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = -3

Query: 778 IHCTGHALTRTAWRFYMRG----TSRIPPMQFTKQELPDLAG*LEVFSLGSPSIQCTRKL 611
           I+C   A+T T  RFYMRG     S   P   T    P     L  F    P +Q     
Sbjct: 325 IYCV--AITSTGCRFYMRGGRGPISHYAPSNSTLSSTPPSTLQL-TFVRFPPPMQVENYA 381

Query: 610 NKKLY-*RPSWVQNLLANTLQIHNIWPVATSPRKLTSFLLLVSEPRFFS 467
           + + Y   P ++QN   +  Q      V T+P K +S   + +   FF+
Sbjct: 382 SSRNYPANPFFLQNQSTSQQQPERSSAVKTTPMKCSSLSNIYTSDLFFA 430


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 422  NSLEQKLRARIGE-AGYNTTVYTGTFGVTQLRDQN 321
            N L Q     +G+  G N  +Y GTFG   L+D+N
Sbjct: 898  NQLHQSAVRILGKMGGRNRQIYLGTFGFDFLQDEN 932


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = -3

Query: 154 NSALTTAATTPRSTGLAGNQIESTSGTA 71
           NSA   AAT P +TGL GN   +TS TA
Sbjct: 22  NSAAQGAAT-PAATGLFGNTNNNTSSTA 48


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 234 IHNFVKVQRNRYLRVIVSVPVKVNINKLAILVP*LGYAEGSRVNS 368
           + N+V+  RN +L V+ +  V V      +++  LGY  G  V S
Sbjct: 128 LQNYVQFPRNMHLSVLAASHVLVEFLLAGVILIQLGYVFGYHVQS 172


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
 Frame = -2

Query: 449 WQPFN-AGNWNSLEQKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQLVDIYLYRDTNNNP 273
           W P   A NW S   +  A      Y  ++         +   N  L     Y D     
Sbjct: 332 WDPLQIANNWTSRGGRAAAFFMGLTYLVSMIAQNISDNTVAAANDLLYFFPRYLDIRRAQ 391

Query: 272 QIPVPLYFYKVVYEPVLQKGTAFVA 198
            I + +  + +V   +LQ GTAF+A
Sbjct: 392 VIVIIIGAWAIVPWKILQNGTAFLA 416


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 592 RPSWVQNLLANTLQ-IHNIWPVATSPRKLTSFLLLVSEPRFFSSMPPLSGNHLMRVTGTR 416
           RP +    L+ TL  +  I P+    R L     +        +   L  NH++R T   
Sbjct: 771 RPHYTVRTLSRTLSYVTEIAPIYGLRRSLYEGFCMSFLTLLDHTSESLLYNHVVRFTLGE 830

Query: 415 LNRNSVHALVKQ 380
           LNR+  +A++KQ
Sbjct: 831 LNRDQQNAILKQ 842


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 605 FVELACTLY*RRPQGKNLQLTS*VW*LLFGELHWGDS 715
           F EL   LY ++ QGK L+L+  +   LFG+++  DS
Sbjct: 767 FSELVKQLYSKKRQGKPLKLSGKMAHGLFGKVNTNDS 803


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 275 PQIPVPLYFYKVVYEPVLQKGTAFVAINNPYYTETE 168
           P  P+ +Y  K V      +GT++  + N YY +T+
Sbjct: 701 PDYPLNVYDEKDVKRVNSLRGTSYKKLGNQYYNDTQ 736


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 782 FYPLYWSCFDQ 750
           FYP+YW C+ Q
Sbjct: 365 FYPIYWVCYGQ 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,891,369
Number of Sequences: 5004
Number of extensions: 88219
Number of successful extensions: 210
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)