Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c02
(852 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB020523-1|BAA76752.1| 368|Homo sapiens endonuclease G-like pro... 42 0.004
BC016351-1|AAH16351.1| 297|Homo sapiens endonuclease G protein. 40 0.015
BC004922-1|AAH04922.1| 297|Homo sapiens endonuclease G protein. 40 0.015
AL441992-12|CAI15412.1| 297|Homo sapiens endonuclease G protein. 40 0.015
X79444-1|CAA55963.1| 297|Homo sapiens endonuclease protein. 37 0.081
BC104213-1|AAI04214.1| 228|Homo sapiens ENDOGL1 protein protein. 36 0.19
BC104212-1|AAI04213.1| 228|Homo sapiens ENDOGL1 protein protein. 36 0.19
AK092650-1|BAC03936.1| 577|Homo sapiens protein ( Homo sapiens ... 33 1.00
AK055470-1|BAB70928.1| 127|Homo sapiens protein ( Homo sapiens ... 33 1.3
AB020735-1|BAA76753.1| 149|Homo sapiens endonuclease G-like pro... 33 1.3
BC131820-1|AAI31821.1| 1976|Homo sapiens FRAS1 protein protein. 32 2.3
BC064487-1|AAH64487.1| 651|Homo sapiens FRAS1 protein protein. 32 2.3
BC052281-1|AAH52281.1| 651|Homo sapiens FRAS1 protein protein. 32 2.3
AJ512501-1|CAD54734.1| 4007|Homo sapiens extracellular matrix pr... 32 2.3
AC131945-1|AAY41027.1| 475|Homo sapiens unknown protein. 32 2.3
>AB020523-1|BAA76752.1| 368|Homo sapiens endonuclease G-like
protein-1 protein.
Length = 368
Score = 41.5 bits (93), Expect = 0.004
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = -2
Query: 536 ARGHLAAKTDFIFATGQRA-TFFFINAAPQWQPFNAGNWNSLEQKLRARIGEAGYNTTVY 360
+RGH+A + F++ A TF+ N PQ N+G WN +E R + E + V
Sbjct: 137 SRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGYWNRIEMYCR-ELTERFEDVWVV 195
Query: 359 TGTFGVTQLRDQNGQLVDIYLYRDTNNNPQIPVPLYFYKVV 237
+G + Q R ++V + + N + VP + YKV+
Sbjct: 196 SGPLTLPQTRGDGKKIVSYQVIGEDN----VAVPSHLYKVI 232
>BC016351-1|AAH16351.1| 297|Homo sapiens endonuclease G protein.
Length = 297
Score = 39.5 bits (88), Expect = 0.015
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 533 RGHLAAKTDFIFAT-GQRATFFFINAAPQWQPFNAGNWNSLEQKLRARIGEAGYNTTVYT 357
RGHLAA + ++ TF+ N APQ N WN+LE+ R+ + + N V T
Sbjct: 139 RGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEKYSRS-LTRSYQNVYVCT 197
Query: 356 GTFGVTQLRDQNGQLVDIYLYRDTNNNPQIPVPLYFYKVV 237
G + + V Y+ N + VP +F+KV+
Sbjct: 198 GPLFLPRTEADGKSYVK---YQVIGKN-HVAVPTHFFKVL 233
>BC004922-1|AAH04922.1| 297|Homo sapiens endonuclease G protein.
Length = 297
Score = 39.5 bits (88), Expect = 0.015
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 533 RGHLAAKTDFIFAT-GQRATFFFINAAPQWQPFNAGNWNSLEQKLRARIGEAGYNTTVYT 357
RGHLAA + ++ TF+ N APQ N WN+LE+ R+ + + N V T
Sbjct: 139 RGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEKYSRS-LTRSYQNVYVCT 197
Query: 356 GTFGVTQLRDQNGQLVDIYLYRDTNNNPQIPVPLYFYKVV 237
G + + V Y+ N + VP +F+KV+
Sbjct: 198 GPLFLPRTEADGKSYVK---YQVIGKN-HVAVPTHFFKVL 233
>AL441992-12|CAI15412.1| 297|Homo sapiens endonuclease G protein.
Length = 297
Score = 39.5 bits (88), Expect = 0.015
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = -2
Query: 533 RGHLAAKTDFIFAT-GQRATFFFINAAPQWQPFNAGNWNSLEQKLRARIGEAGYNTTVYT 357
RGHLAA + ++ TF+ N APQ N WN+LE+ R+ + + N V T
Sbjct: 139 RGHLAAAANHRWSQKAMDDTFYLSNVAPQVPHLNQNAWNNLEKYSRS-LTRSYQNVYVCT 197
Query: 356 GTFGVTQLRDQNGQLVDIYLYRDTNNNPQIPVPLYFYKVV 237
G + + V Y+ N + VP +F+KV+
Sbjct: 198 GPLFLPRTEADGKSYVK---YQVIGKN-HVAVPTHFFKVL 233
>X79444-1|CAA55963.1| 297|Homo sapiens endonuclease protein.
Length = 297
Score = 37.1 bits (82), Expect = 0.081
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = -2
Query: 533 RGHLAAKTDFIFAT-GQRATFFFINAAPQWQPFNAGNWNSLEQKLRARIGEAGYNTTVYT 357
RGHLAA + ++ TF+ APQ N WN+LE+ R+ + + N V T
Sbjct: 139 RGHLAAAANHRWSQKAMDDTFYLSKVAPQVPHLNQNAWNNLEKYSRS-LTRSYQNVYVCT 197
Query: 356 GTFGVTQLRDQNGQLVDIYLYRDTNNNPQIPVPLYFYKVV 237
G + + V Y+ N + VP +F+KV+
Sbjct: 198 GPLFLPRTEADGKSYVK---YQVIGKN-HVAVPTHFFKVL 233
>BC104213-1|AAI04214.1| 228|Homo sapiens ENDOGL1 protein protein.
Length = 228
Score = 35.9 bits (79), Expect = 0.19
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = -2
Query: 479 TFFFINAAPQWQPFNAGNWNSLEQKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQLVDIY 300
TF+ N PQ N+G WN +E R + E + V +G + Q R ++V
Sbjct: 17 TFYLSNIVPQDFDNNSGYWNRIEMYCR-ELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQ 75
Query: 299 LYRDTNNNPQIPVPLYFYKVV 237
+ + N + VP + YKV+
Sbjct: 76 VIGEDN----VAVPSHLYKVI 92
>BC104212-1|AAI04213.1| 228|Homo sapiens ENDOGL1 protein protein.
Length = 228
Score = 35.9 bits (79), Expect = 0.19
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = -2
Query: 479 TFFFINAAPQWQPFNAGNWNSLEQKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQLVDIY 300
TF+ N PQ N+G WN +E R + E + V +G + Q R ++V
Sbjct: 17 TFYLSNIVPQDFDNNSGYWNRIEMYCR-ELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQ 75
Query: 299 LYRDTNNNPQIPVPLYFYKVV 237
+ + N + VP + YKV+
Sbjct: 76 VIGEDN----VAVPSHLYKVI 92
>AK092650-1|BAC03936.1| 577|Homo sapiens protein ( Homo sapiens
cDNA FLJ35331 fis, clone PROST2014659. ).
Length = 577
Score = 33.5 bits (73), Expect = 1.00
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = -3
Query: 589 PSWVQNLLANTLQIHNIWPVATSPRKLTSFLLLVSEPRFFSSMPPLSGNHLMRVTGTRLN 410
P Q LL + + ++ P T+PR L LLLVS + SS+P H M + TR +
Sbjct: 206 PPLCQTLLLVSARHYSSSPPDTTPR-LCQTLLLVSARHYSSSLPDAPPLHEMLLLSTRCS 264
Query: 409 RNSVHALVKQDIILLFTREPSA 344
+ A +++L+ R SA
Sbjct: 265 SSPPDAPPLHEMLLVSARCSSA 286
>AK055470-1|BAB70928.1| 127|Homo sapiens protein ( Homo sapiens
cDNA FLJ30908 fis, clone FEBRA2006150. ).
Length = 127
Score = 33.1 bits (72), Expect = 1.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 116 NWIGWQPDRIDIGYSFCC 63
NW+ W+P+ DIG FCC
Sbjct: 107 NWLQWKPEAEDIGTKFCC 124
>AB020735-1|BAA76753.1| 149|Homo sapiens endonuclease G-like
protein-2 protein.
Length = 149
Score = 33.1 bits (72), Expect = 1.3
Identities = 22/79 (27%), Positives = 35/79 (44%)
Frame = -2
Query: 479 TFFFINAAPQWQPFNAGNWNSLEQKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQLVDIY 300
TF+ N PQ N+G WN +E R + E + V +G + Q R ++V
Sbjct: 17 TFYLSNIVPQDFDNNSGYWNRIEMYCR-ELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQ 75
Query: 299 LYRDTNNNPQIPVPLYFYK 243
+ + N + VP + YK
Sbjct: 76 VIGEDN----VAVPSHLYK 90
>BC131820-1|AAI31821.1| 1976|Homo sapiens FRAS1 protein protein.
Length = 1976
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 56 RWYSRSCTRCRFDLVASQSS*TRCC---CGSGQCRIARRVLQFQCSTGCLSPQKLCPFVG 226
+W +CT C D + C CG GQ R ARR QC C+SP C + G
Sbjct: 233 QWSENACTTCICDRGEVRCHKQACLPLRCGKGQSR-ARR--HGQCCEECVSPAGSCSYDG 289
Query: 227 QAHTQ 241
Q
Sbjct: 290 VVRYQ 294
>BC064487-1|AAH64487.1| 651|Homo sapiens FRAS1 protein protein.
Length = 651
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 56 RWYSRSCTRCRFDLVASQSS*TRCC---CGSGQCRIARRVLQFQCSTGCLSPQKLCPFVG 226
+W +CT C D + C CG GQ R ARR QC C+SP C + G
Sbjct: 75 QWSENACTTCICDRGEVRCHKQACLPLRCGKGQSR-ARR--HGQCCEECVSPAGSCSYDG 131
Query: 227 QAHTQ 241
Q
Sbjct: 132 VVRYQ 136
>BC052281-1|AAH52281.1| 651|Homo sapiens FRAS1 protein protein.
Length = 651
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 56 RWYSRSCTRCRFDLVASQSS*TRCC---CGSGQCRIARRVLQFQCSTGCLSPQKLCPFVG 226
+W +CT C D + C CG GQ R ARR QC C+SP C + G
Sbjct: 75 QWSENACTTCICDRGEVRCHKQACLPLRCGKGQSR-ARR--HGQCCEECVSPAGSCSYDG 131
Query: 227 QAHTQ 241
Q
Sbjct: 132 VVRYQ 136
>AJ512501-1|CAD54734.1| 4007|Homo sapiens extracellular matrix
protein protein.
Length = 4007
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 56 RWYSRSCTRCRFDLVASQSS*TRCC---CGSGQCRIARRVLQFQCSTGCLSPQKLCPFVG 226
+W +CT C D + C CG GQ R ARR QC C+SP C + G
Sbjct: 233 QWSENACTTCICDRGEVRCHKQACLPLRCGKGQSR-ARR--HGQCCEECVSPAGSCSYDG 289
Query: 227 QAHTQ 241
Q
Sbjct: 290 VVRYQ 294
>AC131945-1|AAY41027.1| 475|Homo sapiens unknown protein.
Length = 475
Score = 32.3 bits (70), Expect = 2.3
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 56 RWYSRSCTRCRFDLVASQSS*TRCC---CGSGQCRIARRVLQFQCSTGCLSPQKLCPFVG 226
+W +CT C D + C CG GQ R ARR QC C+SP C + G
Sbjct: 197 QWSENACTTCICDRGEVRCHKQACLPLRCGKGQSR-ARR--HGQCCEECVSPAGSCSYDG 253
Query: 227 QAHTQ 241
Q
Sbjct: 254 VVRYQ 258
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,793,310
Number of Sequences: 237096
Number of extensions: 3475080
Number of successful extensions: 11782
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11782
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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