Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c02
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z78536-3|CAB01717.2|  360|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    28   7.3  
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z81049-5|CAE17733.2|  197|Caenorhabditis elegans Hypothetical pr...    28   9.7  
AL021479-4|CAA16319.1|  301|Caenorhabditis elegans Hypothetical ...    28   9.7  
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical...    28   9.7  

>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -2

Query: 776 PLYWSCFDQN-RLEVLYAWYEQNPPNAVHQTGVTRPSWLAGGFFPGVSVNTMYTQAQQKT 600
           P + + F +N R E  +  Y+  PP    Q     P     GF+P +S+NT Y     + 
Sbjct: 396 PPHLTRFQENQRYEGNFVEYQPPPPQQHQQQQPQAPE----GFYPPISLNTRYDYDSDRD 451

Query: 599 ILASLVGT 576
           IL  L+ T
Sbjct: 452 ILPLLLDT 459


>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical protein
            T19D12.4b protein.
          Length = 1015

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -2

Query: 578  TELAGKYITNSQHMARGHLAAKTDFIFATGQRATFFFINAAPQWQPFNAGNWNSLEQKLR 399
            T ++G + T       GH +  TD IFA        FI A+  +  ++A  W   + +LR
Sbjct: 878  TMMSGVFDTLGTQFGCGHYSDDTDRIFAPN-----LFIFASDNFGTYDASVWTDFQAQLR 932

Query: 398  ARIG 387
             R G
Sbjct: 933  NRYG 936


>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical protein
            T19D12.4a protein.
          Length = 1028

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -2

Query: 578  TELAGKYITNSQHMARGHLAAKTDFIFATGQRATFFFINAAPQWQPFNAGNWNSLEQKLR 399
            T ++G + T       GH +  TD IFA        FI A+  +  ++A  W   + +LR
Sbjct: 891  TMMSGVFDTLGTQFGCGHYSDDTDRIFAPN-----LFIFASDNFGTYDASVWTDFQAQLR 945

Query: 398  ARIG 387
             R G
Sbjct: 946  NRYG 949


>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
           protein C08G9.2 protein.
          Length = 2224

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 92  DLVASQSS*TRCCCGSGQCRIARRVLQFQCSTGCLSPQKLCP 217
           D++AS  S    C    QC   +R  +  CST C+ P +  P
Sbjct: 518 DIIASNVSCATECHSDSQCAGMKRCCRQGCSTSCMYPVRSTP 559


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 375 ISCFTNACTEFLFKRVPVTRI 437
           I+CF N C +FL  R+P+T +
Sbjct: 64  IACFFNVCIKFLIFRIPLTGV 84


>Z78536-3|CAB01717.2|  360|Caenorhabditis elegans Hypothetical
           protein C07A4.1 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 109 LAGNQIESTSGTASAVPSKTLDGLCRICQTLMLP 8
           +AGNQ+  + G   AVP++ L+ L     +LM+P
Sbjct: 297 MAGNQVRCSWGRTQAVPNQALNPLPIDLSSLMMP 330


>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical
           protein K02C4.3 protein.
          Length = 1307

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 675 SGNSCLVNCIGGILLVPRI*NLQAVLVKA*PVQWIEKIVYN 797
           SGN+C +NC+  +L    I   +++L    P+ W E+ + N
Sbjct: 204 SGNTCWLNCLSQVLY--SIPKFRSILYHCAPLSWHEQPITN 242


>U40934-1|AAA81679.1|  511|Caenorhabditis elegans Hypothetical
           protein F35H10.7 protein.
          Length = 511

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
 Frame = -3

Query: 166 YAPCNSALTTAATTP--------RSTGLAGNQIESTSGTASAVPSKTLDGLCR 32
           Y  CN+ + T+AT+P        + T   GN I   +G A   P KTLD   R
Sbjct: 317 YPLCNTNIYTSATSPQPLDKMAEKFTAQFGNTIHLAAGLAHFNPPKTLDTFIR 369


>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 405 FLFKRVPVTRIKWLPLRGGIDEKKRGSLTSSK 500
           FL K +P   +  + L+  +DEKKRGS+ S++
Sbjct: 146 FLEKCIPQEWLTPIVLQASVDEKKRGSVDSAE 177


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 405 FLFKRVPVTRIKWLPLRGGIDEKKRGSLTSSK 500
           FL K +P   +  + L+  +DEKKRGS+ S++
Sbjct: 165 FLEKCIPQEWLTPIVLQASVDEKKRGSVDSAE 196


>Z81049-5|CAE17733.2|  197|Caenorhabditis elegans Hypothetical
           protein C48D1.5 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = -2

Query: 269 IPVPLYFYKVVYEPVLQKGTAFVAINNPYYTETEVRALQFCTDH 138
           I + +Y Y +++ PV  +    ++I NP Y       ++    H
Sbjct: 6   ILIYIYLYYILFIPVCSEDIKIISIENPIYNSRHCELIEMRAGH 49


>AL021479-4|CAA16319.1|  301|Caenorhabditis elegans Hypothetical
           protein Y22F5A.6 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 577 QNLLANTLQIHNIWPVATSP 518
           QNLLAN + + +IW   TSP
Sbjct: 144 QNLLANGINVRSIWIQVTSP 163


>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
           protein Y71G12B.5 protein.
          Length = 1098

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 547 EFVMYLPASSVPTRDASIVFC*ACVYIVLTETPGKKP 657
           E+++ L    VPT DA  VFC     ++  E P  +P
Sbjct: 438 EYLVALSGFGVPTHDAKFVFCSKRRVLISGEIPACQP 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,061,002
Number of Sequences: 27780
Number of extensions: 520110
Number of successful extensions: 1296
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)