Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c02
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.51 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   4.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   4.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.2  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +2

Query: 65  SRSCTRCRFDLVASQSS*TRCCCGSGQCRIARRVLQFQCSTGCLSPQKL-CPFVGQA 232
           S SC  C     +S    T C C  G  R  +   +  C+    +PQ L   FV Q+
Sbjct: 276 SHSCEACPAHSKSSDYGFTECRCDPGYFRAEKDPKKMPCTQPPSAPQNLTVNFVDQS 332


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 470 FINAAPQWQP 441
           F+NAAP W P
Sbjct: 22  FVNAAPDWVP 31


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 470 FINAAPQWQP 441
           F+NAAP W P
Sbjct: 22  FVNAAPDWVP 31


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 250 FTKLCMSLSYKRAQ 209
           FT+LCM L +K A+
Sbjct: 212 FTELCMKLGWKSAR 225


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 23  LANAAQPV*SLRWYSRSCTRCRFDLVAS 106
           LA A+QP  +    + SC R R+++ A+
Sbjct: 84  LAEASQPTSTTTSVTPSCRRQRYNIAAA 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,313
Number of Sequences: 438
Number of extensions: 6836
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)