Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c01
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 89 4e-18
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 88 7e-18
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 85 5e-17
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 85 6e-17
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 84 1e-16
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 81 1e-15
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 76 4e-14
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 58 6e-09
01_01_0181 - 1548392-1548466,1548689-1549379,1549475-1549604,154... 29 4.3
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137... 29 5.7
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076 28 9.9
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 89.0 bits (211), Expect = 4e-18
Identities = 45/57 (78%), Positives = 48/57 (84%), Gaps = 2/57 (3%)
Frame = -1
Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDG--ESADAEQKE 636
LAK AFD+AI+ELDTL EESYKDSTLIMQLLRDNLTLWTSDMQ DG E DA + E
Sbjct: 205 LAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGDEMRDATKPE 261
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 88.2 bits (209), Expect = 7e-18
Identities = 44/60 (73%), Positives = 46/60 (76%)
Frame = -1
Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDG 621
LAK AFDDAIAELDTL EESYKDSTLIMQLLRDNLTLWTSD DG E +P +G
Sbjct: 200 LAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEDGGDEIKEAAKPEGEG 259
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 85.4 bits (202), Expect = 5e-17
Identities = 41/61 (67%), Positives = 46/61 (75%)
Frame = -1
Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDG 621
LAK AFD+AI+ELD+L EESYKDSTLIMQLLRDNLTLWTSD DG E P + G
Sbjct: 178 LAKQAFDEAISELDSLGEESYKDSTLIMQLLRDNLTLWTSDANDDGGDEIKEAAAPKEPG 237
Query: 620 E 618
+
Sbjct: 238 D 238
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 85.0 bits (201), Expect = 6e-17
Identities = 42/62 (67%), Positives = 51/62 (82%)
Frame = -1
Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDG 621
LAK AFD+AI+ELDTLSEESYKDSTLIMQLLRDNLTLWTSD+ D +A+ ++ P +D
Sbjct: 201 LAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISED--TAEEIREAPKRDS 258
Query: 620 ED 615
+
Sbjct: 259 SE 260
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 83.8 bits (198), Expect = 1e-16
Identities = 42/62 (67%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Frame = -1
Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD-GESADAEQKEPAQD 624
LAK AFD+AI+ELDTL EESYKDSTLIMQLLRDNLTLWTSD+ D G+ K A +
Sbjct: 195 LAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKEASKGDACE 254
Query: 623 GE 618
G+
Sbjct: 255 GQ 256
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 81.0 bits (191), Expect = 1e-15
Identities = 38/42 (90%), Positives = 41/42 (97%)
Frame = -1
Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDM 675
LAK AFD+AI+ELDTLSEESYKDSTLIMQLLRDNLTLWTSD+
Sbjct: 419 LAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDI 460
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 75.8 bits (178), Expect = 4e-14
Identities = 35/47 (74%), Positives = 40/47 (85%)
Frame = -1
Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGE 660
LAK AFD+A+AEL +LSEE+YKDSTLIMQLLRDNL LW SDM D +
Sbjct: 185 LAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNSDMADDAD 231
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 58.4 bits (135), Expect = 6e-09
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = -1
Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESAD 651
+AK A D+A AE+++ E YKDS L+MQLL++NL LWTS++ G S D
Sbjct: 174 VAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTGGETSKD 223
>01_01_0181 -
1548392-1548466,1548689-1549379,1549475-1549604,
1549704-1549884
Length = 358
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 598 HYETSWSSPSCAGSFCSASADSPSPCMSEV 687
H + S S+ + AGS +A+A P PC SE+
Sbjct: 214 HIDPSPSTSTSAGSTAAAAAFQPLPCFSEL 243
>12_02_0330 -
17612867-17613161,17613376-17613459,17613554-17613744,
17614085-17614995,17615081-17615252,17615337-17615412,
17615515-17615634,17615841-17616005,17616096-17616186,
17616644-17616785,17616848-17617042,17617132-17617185,
17617299-17617397,17618181-17618296,17618376-17618442
Length = 925
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 552 KSQPAVPTRGPGTALSLFVFDYGKYIICNI-ILWYCILTVV 433
+S P V PG + LFVFD K+ +C + +L YC++ V
Sbjct: 864 RSTPFVDGACPGISCPLFVFD--KFWVCFVEVLSYCMICPV 902
>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
Length = 748
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -1
Query: 323 LL*LLTSIVIEIFVYFNLFFLISQSISKMKCSAPPPGRSVVVTLC*VKVMHLRKYLLSAQ 144
+L +LT I+IE + F +I +M CS P R + + V V+++R LLS+
Sbjct: 444 MLLVLTVILIEAHDFLTSFVFSDWNIVRMLCSYDRPSRRWLQKIYSV-VIYIRSCLLSSS 502
Query: 143 R 141
+
Sbjct: 503 K 503
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,059,939
Number of Sequences: 37544
Number of extensions: 318315
Number of successful extensions: 914
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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