Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c01
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    85   7e-17
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    85   7e-17
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    83   2e-16
U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily ass...    29   2.9  
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      29   3.9  
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    29   3.9  
Z81017-8|CAC70094.2|  988|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.       28   6.8  
AY288941-1|AAP44084.1|  987|Caenorhabditis elegans EGL-15 protein.     28   6.8  

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 39/54 (72%), Positives = 46/54 (85%)
 Frame = -1

Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQK 639
           LAK AFDDAIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD+  + +  +  Q+
Sbjct: 192 LAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDVGAEDQEQEGNQE 245


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 39/54 (72%), Positives = 46/54 (85%)
 Frame = -1

Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQK 639
           LAK AFDDAIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD+  + +  +  Q+
Sbjct: 192 LAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDVGAEDQEQEGNQE 245


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = -1

Query: 800 LAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESAD 651
           LAK AFDDAIAELDTL+E+SYKDSTLIMQLLRDNLTLWTSD   D   A+
Sbjct: 193 LAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDAATDDTDAN 242


>U41545-4|AAK39134.1|  665|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 52 protein.
          Length = 665

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = -1

Query: 788 AFDDAIAELDTLSEESYKDSTLIM-----QLLRDNL-TLWTSDMQGDGESADAEQKEPAQ 627
           A D+A    DTL +ES+K  +LI      Q  RD L  + T+DM G+  S    +K+PA 
Sbjct: 352 AIDNAKKLRDTLRKESFKQKSLIFDKGFWQRNRDKLRNMITADMTGN-ISRVLTRKKPAP 410

Query: 626 DGEDQD 609
             E+ D
Sbjct: 411 KLEESD 416


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 749 EESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 609
           E+ Y+D T       D +  W S +    +   AE++E  +D +D D
Sbjct: 136 EKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDD 182


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 749 EESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 609
           E+ Y+D T       D +  W S +    +   AE++E  +D +D D
Sbjct: 136 EKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDD 182


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 749 EESYKDSTLIMQLLRDNLTLWTSDMQGDGESADAEQKEPAQDGEDQD 609
           E+ Y+D T       D +  W S +    +   AE++E  +D +D D
Sbjct: 136 EKIYEDGTTEEGTSEDTVPTWDSSLAYSTDETTAEKEEKEEDEDDDD 182


>Z81017-8|CAC70094.2|  988|Caenorhabditis elegans Hypothetical
           protein F58A3.2b protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 216 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 97
           R + +RNV++G G+ L+      + DV  N ++R+R   R
Sbjct: 744 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 783


>Z81017-7|CAB02673.2| 1040|Caenorhabditis elegans Hypothetical
           protein F58A3.2a protein.
          Length = 1040

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 216 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 97
           R + +RNV++G G+ L+      + DV  N ++R+R   R
Sbjct: 796 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 835


>U39761-1|AAC46934.1| 1040|Caenorhabditis elegans EGL-15 protein.
          Length = 1040

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 216 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 97
           R + +RNV++G G+ L+      + DV  N ++R+R   R
Sbjct: 796 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 835


>AY288941-1|AAP44084.1|  987|Caenorhabditis elegans EGL-15 protein.
          Length = 987

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 216 RTIGSRNVVLG*GYALEEVFIERAEDVRSNTFHRRRSG*R 97
           R + +RNV++G G+ L+      + DV  N ++R+R   R
Sbjct: 743 RDLAARNVLVGDGHVLKISDFGLSRDVHCNDYYRKRGNGR 782


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,288,939
Number of Sequences: 27780
Number of extensions: 263143
Number of successful extensions: 788
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)