Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b24
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    68   6e-13
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   3.4  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    24   7.9  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   7.9  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    24   7.9  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 67.7 bits (158), Expect = 6e-13
 Identities = 30/39 (76%), Positives = 36/39 (92%)
 Frame = -2

Query: 326 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKF 210
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  F
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAF 44



 Score = 54.4 bits (125), Expect = 6e-09
 Identities = 29/69 (42%), Positives = 42/69 (60%)
 Frame = -3

Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
           K+  +FA+K M T ++RVD  LNK +W +G+RNVP          R+D++D A  L+T V
Sbjct: 39  KEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYV 96

Query: 46  TYVPVASIK 20
             V VA+ K
Sbjct: 97  QAVDVANPK 105


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -2

Query: 317  INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDGNSGHSSRHSLKQ 156
            INE VT +Y  N+   + G+G  ++A   +K+I     + D  S   S+  + +
Sbjct: 860  INEAVTNKYEANILPYIAGLG-PRKADYVLKKIAATGGRIDNRSDLISKQIMSR 912


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 295 NIQLIYTNDFMVLDLKSVPQEQSKKSESFAEKQMGTPDIR 176
           NI     N+  VLDL   P ++S  S S    +  TP+ R
Sbjct: 276 NILNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQTPNAR 315


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 289  VYSRVTTSFMADLPFLSPLGLAIVILS 369
            V+   +TSF  D+ FLS L LA+  L+
Sbjct: 1237 VFYEESTSFALDVDFLSSLQLAVESLT 1263


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 31  QQARKSLV*ITYVRNLHHHYVFVKASH 111
           ++A+KSL    + R  + HYVFV   H
Sbjct: 452 EEAKKSLWSKRFSRFYYGHYVFVNTCH 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,638,107
Number of Sequences: 5004
Number of extensions: 30840
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)