Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b24
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                       71   3e-13
08_02_1181 - 24985963-24986242,24987109-24987197                       69   1e-12
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649     69   2e-12
03_02_0178 + 6195402-6199158,6199438-6200003                           27   7.6  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 34/51 (66%), Positives = 39/51 (76%)
 Frame = -2

Query: 344 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDG 192
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKF  K  G
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMG 54



 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = -3

Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
           K+   FA+K MGT D+RVD +LNK +WS G+R+VP          RND+ED+  +L++LV
Sbjct: 43  KEIRKFAQKAMGTIDVRVDVKLNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLV 102

Query: 46  TY--VPVASIKGCRQKM 2
           T   VP   +KG   K+
Sbjct: 103 TVAEVPQEGLKGLGTKL 119


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
 Frame = -3

Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
           K+   FA+K MGT D+RVD +LNK +WS G+R+VP          RND+ED+  +L++LV
Sbjct: 41  KEIRKFAQKAMGTTDVRVDVKLNKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLV 100

Query: 46  TY--VPVASIKGCRQKM 2
           T   VP   +KG   K+
Sbjct: 101 TVAEVPPEGLKGLGTKV 117



 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 1/52 (1%)
 Frame = -2

Query: 338 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDGNS 186
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKF  K  G +
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTT 54


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
 Frame = -3

Query: 280 YTNDFMVLDLKSVPQEQSKKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXX 101
           Y  D +    K  P    K+   FA+K MGT DIR+D +LNK +W+ G+R+VP       
Sbjct: 41  YAPDIVSTFKKKAPNA-IKEIRKFAQKAMGTTDIRIDVKLNKAIWTNGIRSVPRRVRVRI 99

Query: 100 XXXRNDDEDSAHKLFTLVTY--VPVASIKGCRQKM 2
              RND+ED+  +L++LVT   +P   +KG   K+
Sbjct: 100 SRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKV 134



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 31/59 (52%), Positives = 35/59 (59%), Gaps = 16/59 (27%)
 Frame = -2

Query: 314 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFR*KTDGNS 186
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKF  K  G +
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTT 71


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 374 TKLKITMAKPKGERKGKSAINEVVTREYTVNL 279
           T L + M KP  E KGK    +V+++E  + +
Sbjct: 704 TALNLIMGKPSAEDKGKGIAFDVLSKEEDIGV 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,013,667
Number of Sequences: 37544
Number of extensions: 179930
Number of successful extensions: 412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)