Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b24
         (408 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase...    25   1.4  
U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase...    24   1.9  
AY330180-1|AAQ16286.1|  176|Anopheles gambiae odorant-binding pr...    23   3.2  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    22   7.5  
AF515525-1|AAM61892.1|  235|Anopheles gambiae glutathione S-tran...    22   7.5  

>U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 275 KRLHGVGFKKRAPRAIKEIR 216
           +RLH  GF  R PR +++++
Sbjct: 96  RRLHAAGFCARRPRKVRKLQ 115


>U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 260

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 275 KRLHGVGFKKRAPRAIKEI 219
           +RLH  GF  R PR ++++
Sbjct: 24  RRLHAAGFCARRPRKVRKL 42


>AY330180-1|AAQ16286.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP54 protein.
          Length = 176

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 243 CPKSNQRNPKVSLKNRWELR 184
           CP+   +N + S+K  W L+
Sbjct: 155 CPEDKWQNSEYSVKGEWSLK 174


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 73  NLHHHYVFVKASHGH 117
           N+H H +F    HGH
Sbjct: 425 NIHLHALFSAVEHGH 439


>AF515525-1|AAM61892.1|  235|Anopheles gambiae glutathione
           S-transferase protein.
          Length = 235

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 308 LRLWLICLFFHLWV*PLL 361
           LR  +   FFH+W+ PLL
Sbjct: 109 LRADVSLYFFHVWLNPLL 126


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,585
Number of Sequences: 2352
Number of extensions: 7845
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 32922351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)