Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13b24
(408 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31 pro... 91 1e-18
X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for ... 91 1e-18
BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31 p... 91 1e-18
BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein. 91 1e-18
BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31 p... 91 1e-18
AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein. 91 1e-18
AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31 p... 91 1e-18
AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31 p... 43 3e-04
>X69181-1|CAA48925.1| 121|Homo sapiens ribosomal protein L31
protein.
Length = 121
Score = 91.5 bits (217), Expect = 1e-18
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -3
Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
K+ FA K+MGTPD+R+DTRLNK +W+KG+RNVP+ RN+DEDS +KL+TLV
Sbjct: 43 KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLV 102
Query: 46 TYVPVASIK 20
TYVPV + K
Sbjct: 103 TYVPVTTFK 111
Score = 86.6 bits (205), Expect = 3e-17
Identities = 41/54 (75%), Positives = 47/54 (87%), Gaps = 1/54 (1%)
Frame = -2
Query: 350 KPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDG 192
K GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKF K G
Sbjct: 1 KKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMG 54
>X15940-1|CAA34066.1| 125|Homo sapiens protein ( Human mRNA for
ribosomal protein L31. ).
Length = 125
Score = 91.5 bits (217), Expect = 1e-18
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -3
Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
K+ FA K+MGTPD+R+DTRLNK +W+KG+RNVP+ RN+DEDS +KL+TLV
Sbjct: 47 KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLV 106
Query: 46 TYVPVASIK 20
TYVPV + K
Sbjct: 107 TYVPVTTFK 115
Score = 88.2 bits (209), Expect = 9e-18
Identities = 42/55 (76%), Positives = 48/55 (87%), Gaps = 1/55 (1%)
Frame = -2
Query: 353 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDG 192
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKF K G
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMG 58
>BC070373-1|AAH70373.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 91.5 bits (217), Expect = 1e-18
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -3
Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
K+ FA K+MGTPD+R+DTRLNK +W+KG+RNVP+ RN+DEDS +KL+TLV
Sbjct: 47 KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLV 106
Query: 46 TYVPVASIK 20
TYVPV + K
Sbjct: 107 TYVPVTTFK 115
Score = 88.2 bits (209), Expect = 9e-18
Identities = 42/55 (76%), Positives = 48/55 (87%), Gaps = 1/55 (1%)
Frame = -2
Query: 353 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDG 192
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKF K G
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMG 58
>BC070210-1|AAH70210.1| 121|Homo sapiens RPL31 protein protein.
Length = 121
Score = 91.5 bits (217), Expect = 1e-18
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -3
Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
K+ FA K+MGTPD+R+DTRLNK +W+KG+RNVP+ RN+DEDS +KL+TLV
Sbjct: 47 KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLV 106
Query: 46 TYVPVASIK 20
TYVPV + K
Sbjct: 107 TYVPVTTFK 115
Score = 88.2 bits (209), Expect = 9e-18
Identities = 42/55 (76%), Positives = 48/55 (87%), Gaps = 1/55 (1%)
Frame = -2
Query: 353 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDG 192
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKF K G
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMG 58
>BC017343-1|AAH17343.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 91.5 bits (217), Expect = 1e-18
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -3
Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
K+ FA K+MGTPD+R+DTRLNK +W+KG+RNVP+ RN+DEDS +KL+TLV
Sbjct: 47 KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLV 106
Query: 46 TYVPVASIK 20
TYVPV + K
Sbjct: 107 TYVPVTTFK 115
Score = 88.2 bits (209), Expect = 9e-18
Identities = 42/55 (76%), Positives = 48/55 (87%), Gaps = 1/55 (1%)
Frame = -2
Query: 353 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDG 192
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKF K G
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMG 58
>AC016738-2|AAY14823.1| 125|Homo sapiens unknown protein.
Length = 125
Score = 91.5 bits (217), Expect = 1e-18
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -3
Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
K+ FA K+MGTPD+R+DTRLNK +W+KG+RNVP+ RN+DEDS +KL+TLV
Sbjct: 47 KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLV 106
Query: 46 TYVPVASIK 20
TYVPV + K
Sbjct: 107 TYVPVTTFK 115
Score = 88.2 bits (209), Expect = 9e-18
Identities = 42/55 (76%), Positives = 48/55 (87%), Gaps = 1/55 (1%)
Frame = -2
Query: 353 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDG 192
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKF K G
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMG 58
>AB061830-1|BAB79468.1| 125|Homo sapiens ribosomal protein L31
protein.
Length = 125
Score = 91.5 bits (217), Expect = 1e-18
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = -3
Query: 226 KKSESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLV 47
K+ FA K+MGTPD+R+DTRLNK +W+KG+RNVP+ RN+DEDS +KL+TLV
Sbjct: 47 KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLV 106
Query: 46 TYVPVASIK 20
TYVPV + K
Sbjct: 107 TYVPVTTFK 115
Score = 88.2 bits (209), Expect = 9e-18
Identities = 42/55 (76%), Positives = 48/55 (87%), Gaps = 1/55 (1%)
Frame = -2
Query: 353 AKPKGERK-GKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTDG 192
AK GE+K G+SAINEVVTREYT+N+HKR+HGVGFKKRAPRA+KEIRKF K G
Sbjct: 4 AKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMG 58
>AB007180-1|BAA25839.1| 47|Homo sapiens ribosomal protein L31
protein.
Length = 47
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/37 (54%), Positives = 25/37 (67%)
Frame = -3
Query: 130 NVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIK 20
NVP+ RN+DEDS +KL+TLVTYVPV + K
Sbjct: 1 NVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFK 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,370,308
Number of Sequences: 237096
Number of extensions: 983599
Number of successful extensions: 5493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5493
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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