Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b24
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical pr...    83   7e-17
Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical pr...    77   4e-15

>Z82077-3|CAB63331.1|  122|Caenorhabditis elegans Hypothetical
           protein W09C5.6a protein.
          Length = 122

 Score = 83.0 bits (196), Expect = 7e-17
 Identities = 37/67 (55%), Positives = 48/67 (71%)
 Frame = -3

Query: 217 ESFAEKQMGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYV 38
           + FA+ QM T D+RVDT+LNKF+WSKG++NVP+         RN+DEDSA KL+TL TYV
Sbjct: 46  KKFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYV 105

Query: 37  PVASIKG 17
           P  +  G
Sbjct: 106 PCTNFHG 112



 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 31/46 (67%), Positives = 39/46 (84%)
 Frame = -2

Query: 347 PKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKF 210
           PK E+K +S INEVVTREYT+++H R+ G+G KKRAPRAI EI+KF
Sbjct: 3   PKNEKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKF 48


>Z82077-4|CAB63332.1|   70|Caenorhabditis elegans Hypothetical
           protein W09C5.6b protein.
          Length = 70

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 34/60 (56%), Positives = 43/60 (71%)
 Frame = -3

Query: 196 MGTPDIRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIKG 17
           M T D+RVDT+LNKF+WSKG++NVP+         RN+DEDSA KL+TL TYVP  +  G
Sbjct: 1   MKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTYVPCTNFHG 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,051,134
Number of Sequences: 27780
Number of extensions: 171474
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)