Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b24
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   2.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   9.4  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 380 RYTKLKITMAKPKG 339
           RY+KLK    KPKG
Sbjct: 26  RYSKLKRNWRKPKG 39


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 311 EVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFR*KTD 195
           EV++R+ T+N+    H    K    +AI  ++  R K +
Sbjct: 35  EVISRQATINIGTIGHVAHGKSTIVKAISGVQTVRFKNE 73


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 307 TSFMADLPFLSPLGLAIVILSFVYRIQLR 393
           T F A   FLS L  A+++    +RI  R
Sbjct: 7   TGFSASSVFLSLLIPALILYFIYFRISRR 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,939
Number of Sequences: 438
Number of extensions: 1950
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)