Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13b22
(809 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 365 e-101
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.005
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 34 0.10
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.3
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.9
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.9
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 6.9
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.9
Z30317-6|CAA82972.3| 193|Caenorhabditis elegans Hypothetical pr... 28 9.1
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 365 bits (897), Expect = e-101
Identities = 170/252 (67%), Positives = 201/252 (79%)
Frame = -3
Query: 780 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 601
RGPKKHLKRL AP WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL E
Sbjct: 2 RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61
Query: 600 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 421
KI+ QR+++VDGKVRT +P GFMDVV+IE+TNE FR++YD KGR+ +HRI EA +K
Sbjct: 62 KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121
Query: 420 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 241
LCKVK V T K VP L T DGRTIRYPDP +KVND+I +I+T KI D +KFE GNL
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181
Query: 240 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGK 61
+TGGRN+GRVG I RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGA 241
Query: 60 GIRLTIAEERDQ 25
GIRL+IAEERD+
Sbjct: 242 GIRLSIAEERDK 253
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -2
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 44
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 37.1 bits (82), Expect = 0.015
Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Frame = -2
Query: 217 ARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHHR 41
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHG 523
Query: 40 RGAGPSASQPRSP 2
G +P
Sbjct: 524 THHGHHGEHHHAP 536
Score = 35.9 bits (79), Expect = 0.034
Identities = 22/66 (33%), Positives = 24/66 (36%)
Frame = -2
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 29
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 28 PSASQP 11
P
Sbjct: 460 EHHHAP 465
Score = 35.1 bits (77), Expect = 0.060
Identities = 28/107 (26%), Positives = 36/107 (33%), Gaps = 1/107 (0%)
Frame = -2
Query: 352 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRL 176
HH + + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 175 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 35
AH G HG H H H GH G H GH H G
Sbjct: 555 HHSPAHHGHHGEH--HHAPAH-HGHHGHHGSH--GVHHGHHESHGHG 596
Score = 35.1 bits (77), Expect = 0.060
Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Frame = -2
Query: 238 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 68
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 67 RQGHPP---HHRRG 35
H HH G
Sbjct: 703 HGHHDDKENHHHHG 716
Score = 33.5 bits (73), Expect = 0.18
Identities = 28/116 (24%), Positives = 35/116 (30%), Gaps = 2/116 (1%)
Frame = -2
Query: 352 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARG-HHRVPRETSR 179
HH + + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 178 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGPSASQP 11
H H HG H H H G G H H P H G P
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAP 571
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -2
Query: 169 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHH 44
H AH HG H RH E H+ H G H GH H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGHHGEH 432
Score = 32.7 bits (71), Expect = 0.32
Identities = 28/100 (28%), Positives = 34/100 (34%), Gaps = 8/100 (8%)
Frame = -2
Query: 307 PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRH 128
P H ++ ++G+H Y GA HH P H G HG H H
Sbjct: 600 PAHHGHHGEHGVHHG-HHGAGYGAHHGHHGAH-HHHAPHHEHHEHHGDHHHGSHGVHHGH 657
Query: 127 EVEQRV---HNRQG----HEGVHLAAARQG-HPPHHRRGA 32
H G H G H + A G H HH GA
Sbjct: 658 HGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGA 697
Score = 31.9 bits (69), Expect = 0.56
Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 2/105 (1%)
Frame = -2
Query: 352 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VRELVYDHGRP*LGARGHHRVPRETSRL 176
HH + + + H P H ++ +G H V HG GHH P
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGV-------HHGHHESHGHGHH-APA----- 601
Query: 175 LRHCAHQGLHGTHL-RHEVEQRVHNRQGHEGVHLAAARQGHPPHH 44
H H G HG H H H+ GH G H H PHH
Sbjct: 602 --HHGHHGEHGVHHGHHGAGYGAHH--GHHGAH-----HHHAPHH 637
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = -2
Query: 208 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 29
HH E H H G HG+H H H H H + H GAG
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAG 619
Query: 28 PSA 20
A
Sbjct: 620 YGA 622
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = -2
Query: 211 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 80
G H P H H HG H H ++ H+ GH H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.10
Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = -2
Query: 169 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGAGPSASQ 14
HC G HG H R H G G R GH PPHH G S S+
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSR 412
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = -2
Query: 169 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGPSASQPRSP 2
HC G HG H + R +R GH H R PPHH P P P
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHHGHHHFPPFWPPCPP 444
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -3
Query: 468 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 337
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 250 LVYDHGRP*LGARGHHRVPRETSRLLRH 167
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 250 LVYDHGRP*LGARGHHRVPRETSRLLRH 167
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 57 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 146
C C+ A C P CP + + CS T R C+P
Sbjct: 54 CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +2
Query: 311 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 475
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>Z30317-6|CAA82972.3| 193|Caenorhabditis elegans Hypothetical
protein T16G12.3 protein.
Length = 193
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -2
Query: 238 HGRP*LGARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG 59
HG P LG++ H+ ++ AH+ LH E+ VH QG++ A G
Sbjct: 51 HGHPSLGSQSHNLTSAQSEG---RNAHKDLH--------ERHVHPSQGYQRHGSKAPAHG 99
Query: 58 HP 53
HP
Sbjct: 100 HP 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,118
Number of Sequences: 27780
Number of extensions: 478627
Number of successful extensions: 1558
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -