Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13b21
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 33 0.19
03_02_0438 + 8470290-8470378,8470900-8470990,8471074-8471134,847... 33 0.26
12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797 33 0.34
07_03_1287 + 25510813-25510862,25511326-25511504,25511715-255120... 33 0.34
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799... 31 0.79
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 31 1.4
03_05_0086 - 20642873-20643033,20643384-20643504,20643698-206437... 30 1.8
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461... 30 1.8
02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456... 30 1.8
07_03_0951 - 22836167-22836358,22836455-22837213 29 3.2
02_03_0236 + 16717320-16717496,16718082-16718240,16719410-167194... 29 3.2
03_02_0055 - 5295466-5295476,5295519-5296635,5296760-5296855,529... 29 4.2
11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317... 29 5.5
10_02_0128 + 5567202-5568107,5568587-5568968,5570356-5570423,557... 28 7.3
07_03_1013 + 23299569-23300630 28 7.3
01_01_1129 - 8948612-8950117,8951354-8951503 28 7.3
05_01_0399 - 3154179-3154313,3154834-3154926,3155173-3155285,315... 28 9.7
04_01_0301 + 4016588-4016627,4016715-4018837 28 9.7
02_03_0313 - 17590109-17590148,17590254-17590382,17590479-175906... 28 9.7
01_06_1530 - 38019997-38020011,38020705-38020867,38021126-380212... 28 9.7
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 28 9.7
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 33.5 bits (73), Expect = 0.19
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -3
Query: 558 DADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLFEEKMN 379
D +K + K +HK + K DK ELEE E+H + + + + R+ + + K
Sbjct: 125 DKHRDKKDRKEKHKDKKKDKSKDKSRELEEGTERHSEALHGQKVGESSRKSEEIKDPKSR 184
Query: 378 NAAVT 364
VT
Sbjct: 185 EDLVT 189
>03_02_0438 +
8470290-8470378,8470900-8470990,8471074-8471134,
8471678-8471755,8471891-8471964,8472689-8472802,
8472881-8472988,8473937-8473975,8474046-8474132
Length = 246
Score = 33.1 bits (72), Expect = 0.26
Identities = 25/121 (20%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Frame = -3
Query: 744 QRARTEQHVQMINDVEASPTNSIEYYKHRMDSEQRVHHEIELLLNIKIGEILAKVESWMN 565
+ R ++ ++ D + + ++ K+ E+ + +L+ IK+ EIL E
Sbjct: 107 EELRAKRKKELKKDSASKIKSQVDEGKYEEQYERSEEFQKQLI--IKVREILTDKEWRRR 164
Query: 564 KYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEK-HQKLIQNWQKFKDDREEARLFEE 388
K + + E +++ + E ++++ K+ E EE E+ + + +W+ F ++AR E
Sbjct: 165 KMQMRISEEEGRLKKDEEETKEMWKKKREHEEKWEETRDQRVSSWRDFMKTGKKARKGEI 224
Query: 387 K 385
K
Sbjct: 225 K 225
>12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797
Length = 341
Score = 32.7 bits (71), Expect = 0.34
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Frame = -3
Query: 561 YDADMEKIELKIQHKQN--EHQKIFDKRVEL----EETLEKHQKLIQNWQKFKDDREEAR 400
Y + K + K +H +N E +K +KR++ E+ KH K+I +K K++R +
Sbjct: 186 YKTMLAKEKDKAEHHKNMLEEEKDNNKRLKTMLVEEKDKNKHHKIILEEEKDKNERLKTM 245
Query: 399 LFEEKMNN 376
L EEK+ N
Sbjct: 246 LSEEKVKN 253
>07_03_1287 +
25510813-25510862,25511326-25511504,25511715-25512037,
25512160-25513950
Length = 780
Score = 32.7 bits (71), Expect = 0.34
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = -3
Query: 633 HEIELLLNIKIGEILAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKH 454
HE E L + + E LA+VES +E++ + + NE ++ ++ +E E +
Sbjct: 638 HEAEQLAHESVTEALAQVESAKASESNSLERL-CEASKRMNEKKEALERALERAERANQG 696
Query: 453 QKLI-QNWQKFKDDREEARLFEEKMNNAAVTVQS 355
+ Q +K++ D E+ R +E A + S
Sbjct: 697 KLTAEQELRKWRADHEQRRKAQEAAKRAVNPLSS 730
>02_04_0469 -
23178589-23178755,23179529-23179697,23179836-23179919,
23180495-23180647,23180798-23180950,23182488-23182589
Length = 275
Score = 31.5 bits (68), Expect = 0.79
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -3
Query: 597 EILAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQK--LIQNWQKF 424
E+L +V++W + + IEL + K +FD L+ Q I + QK
Sbjct: 70 ELLKQVDTWQMNVEQQLSDIELASKQK-----AVFDSLKAGNAALKSIQNEINIDDVQKL 124
Query: 423 KDDREEARLFEEKMNNA 373
DD EA+ +++++N A
Sbjct: 125 MDDTAEAKAYQDEINAA 141
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/88 (22%), Positives = 44/88 (50%)
Frame = -3
Query: 660 RMDSEQRVHHEIELLLNIKIGEILAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRV 481
++ E+R H ++L ++ + + + N + E + + Q + E +++ +KR
Sbjct: 464 KLTEEERQEH---IMLTAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFEEEWEQLDEKRT 520
Query: 480 ELEETLEKHQKLIQNWQKFKDDREEARL 397
LEE +K +N +++ D+ EE RL
Sbjct: 521 HLEEEAKKLNNEKKNLERWHDN-EEKRL 547
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/73 (17%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -3
Query: 591 LAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNW-QKFKDD 415
LA+ ++ D D+E++E + + + E ++R E+ +++ + +++W +K K+
Sbjct: 170 LAEANRKKSQADRDLEEVEARQRRLEKEKLYFENERKAGEDRIKRQEDSLRDWDKKLKES 229
Query: 414 REEARLFEEKMNN 376
+ + +N+
Sbjct: 230 QNRILDLQRSLND 242
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/96 (18%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Frame = -3
Query: 603 IGEILAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQ--KLIQNWQ 430
+ E K+E W N D ++ + QN+ +++ ++++++E ++ + KL
Sbjct: 386 LNESKKKLEEWQNDLDTKSNALKKWEESLQNDEKQLSEQKLQIENERKQAEMYKLELESL 445
Query: 429 KFKDDREEARLFEEKMNNAAVTVQSWWRGLLVRLEL 322
K E+ ++ +E+ NN +T + +++ +L
Sbjct: 446 KATVVAEKEKILQEQ-NNLKLTEEERQEHIMLTAQL 480
>03_05_0086 -
20642873-20643033,20643384-20643504,20643698-20643744,
20643882-20643921,20644331-20644418,20644949-20645161,
20645589-20645628,20646332-20646416
Length = 264
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 549 MEKIELKIQHKQNE-HQKIFDKRVELEETLEKHQKLIQNWQK 427
++K+ K+ + E HQK +K ++L ++KH+KL + K
Sbjct: 210 LQKLMAKLDEESEELHQKFLEKDIDLPTFVQKHKKLRTAYHK 251
>02_05_1224 +
35045268-35045270,35045735-35045863,35046037-35046180,
35046306-35046451,35046583-35046739,35046838-35046896,
35046978-35047137,35047716-35047865,35047969-35048105,
35048186-35048332,35048428-35048540,35048880-35048971,
35049637-35049738,35050108-35050145,35050255-35050381,
35050462-35050632,35050721-35050852,35050929-35051038,
35051118-35051178,35051386-35051427,35051756-35051933,
35052043-35052248,35052843-35052962,35053138-35053182,
35053310-35053408,35053846-35054058,35054254-35054393,
35054469-35054583,35054684-35054722,35054816-35054899,
35054969-35055139,35055891-35056100,35056193-35056378,
35056473-35056601,35056679-35056749,35056834-35056933,
35057016-35057072,35057778-35057834,35057940-35058020,
35058256-35058338,35058448-35058562
Length = 1572
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 405 ARLFEEKMNNAAVTVQSWWRGLLVRLEL 322
ARL+ + AA+T Q WRG + R EL
Sbjct: 876 ARLYYSRTKKAAITTQCAWRGKVARKEL 903
>02_01_0611 -
4567839-4568144,4568280-4569209,4569301-4569566,
4569662-4569970,4570497-4570647,4570958-4571012,
4571137-4571512,4571560-4571797,4571878-4572096,
4572629-4572910
Length = 1043
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = -3
Query: 552 DMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLFEEKMNNA 373
+MEK+ LK + Q++ +LE +K + L ++W+ K R +E+ +
Sbjct: 577 EMEKLSLKNDTDKASKQRLSKLEADLESLKQKQKNLSEHWEYEKSLMTRIRSIKEETDRV 636
Query: 372 AVTVQS 355
+ +++
Sbjct: 637 NLEIEA 642
>07_03_0951 - 22836167-22836358,22836455-22837213
Length = 316
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 624 ELLLNIKIGEILAKVESWMNKYDADMEKIELKIQHK-QNEHQKIFDKRVELEETLE 460
E+++N G+ + K +W+ KY+ +E+ K K QNE K K E + E
Sbjct: 231 EVVINGWEGDQVEKANAWLKKYERKLEEKRAKAMEKAQNEVAKARRKAEEKRASAE 286
>02_03_0236 +
16717320-16717496,16718082-16718240,16719410-16719472,
16720041-16720205,16721140-16721217,16721318-16721428,
16721516-16721632,16721713-16721808,16722592-16722662,
16722780-16723011
Length = 422
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Frame = -3
Query: 606 KIGEILAKVESWMNKYDADMEKIELKIQHKQNE--HQKIFDKRVELE-ETLEKHQKLIQN 436
K+G + +E +K+ A +E L+I Q +KIF KR ELE E+L+K + +
Sbjct: 204 KMGGYIVNIEKVKDKHAAYLEVSRLEIFFHQLSMYEEKIFLKRYELEQESLKKSCRDVLR 263
Query: 435 WQKFKDDREEARLFEEKMNN 376
+ E +R E++ N
Sbjct: 264 EASESERLELSRKLEDRFFN 283
>03_02_0055 -
5295466-5295476,5295519-5296635,5296760-5296855,
5297097-5297263,5297345-5297519,5297521-5297699,
5298004-5298109
Length = 616
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 522 HKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLFEEKM 382
H+ E K+ DK VEL E KH ++ F DD+++ + EK+
Sbjct: 314 HQNEEDYKVSDKMVELAE---KHNITLRGHNVFWDDQDKQMDWVEKL 357
>11_06_0399 -
23129476-23129745,23131040-23131121,23131216-23131711,
23132135-23132699,23132825-23132893
Length = 493
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = -3
Query: 588 AKVESWMN----KYDADMEKIELKIQH-KQNEHQKIFDKRVELEETLEKHQKL--IQNWQ 430
AK+++W+N K +A K+E+KIQ + N +K+ + + E+ + Q+ Q
Sbjct: 383 AKIQAWINLESAKAEAQSRKLEVKIQKMRSNLEEKLMRRMTTVHRRAEEWRATAQAQHLQ 442
Query: 429 KFKDDREEAR 400
+ K E+ R
Sbjct: 443 QLKRAAEQVR 452
>10_02_0128 +
5567202-5568107,5568587-5568968,5570356-5570423,
5570899-5571034,5571206-5571283,5571623-5571747
Length = 564
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -3
Query: 552 DMEKIELKIQHKQNEHQKIFDKRVELEETLEKHQK 448
+ME++ +K QHK N + ++ + +E L++HQ+
Sbjct: 433 NMERLAMK-QHKMNNYVNVWKPAMLVENELQEHQR 466
>07_03_1013 + 23299569-23300630
Length = 353
Score = 28.3 bits (60), Expect = 7.3
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 16/112 (14%)
Frame = -3
Query: 666 KHRMDSEQRVHHEIELLLNIKIGEIL-AKVESWMNKY-DADMEK---------IELKIQH 520
+HR + E+++HH ++ K+ + L + E ++ Y D + EK E K+ H
Sbjct: 90 QHRDEQEEKLHHYLDEEHEKKLQDHLDEEPEKKLHHYLDEEQEKKLQDHLDEEPEKKLHH 149
Query: 519 KQNEHQ-KIFDKRVELEET----LEKHQKLIQNWQKFKDDREEARLFEEKMN 379
+E Q K+F + E E+T L++ QK +Q Q D+ + +E++ N
Sbjct: 150 YLDEEQEKLFQDQDEEEKTPKQYLDEDQKTLQQCQ---DEEKAPNQYEDEDN 198
>01_01_1129 - 8948612-8950117,8951354-8951503
Length = 551
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -3
Query: 522 HKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDDREEARLFEEKMNN 376
HK+ E +K + +V++ + E ++ + Q+ KD+ A + EEK N+
Sbjct: 53 HKETEERKYDEMKVDVPQEEEDNEMKVDAPQEKKDNEVTADVPEEKGND 101
>05_01_0399 -
3154179-3154313,3154834-3154926,3155173-3155285,
3155684-3155780
Length = 145
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 471 ETLEKHQKLIQNWQKFKDDR 412
E ++KH+KLI+ WQK D+
Sbjct: 115 ELIDKHKKLIEGWQKELKDQ 134
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 27.9 bits (59), Expect = 9.7
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = -3
Query: 705 DVEASPTNSIEYYKHRMDSEQRVHHEIELLLNIKIGEILAKVESWMNKYDADMEKIELKI 526
D + +E K R E+E L + + KV + KY+ +EK+++++
Sbjct: 43 DEKGKVEKQLEETKQEAQVISRQKEEVESSLKGQNEMLGLKVLNVEEKYNHMVEKLQMEL 102
Query: 525 QHKQNEHQKIFDKRVELEETLEKHQKLIQNWQKFKDD-REEARLFEEK 385
E +K+ + +L+ LE+ Q + KD R EA + ++K
Sbjct: 103 CALVKEKEKMMMESEDLKRRLEEIQAKKDLMESEKDMLRSEAMITKQK 150
>02_03_0313 -
17590109-17590148,17590254-17590382,17590479-17590612,
17590779-17590841,17590920-17591070,17593372-17593424,
17593483-17593629,17593839-17594163,17594240-17594409,
17595252-17595453,17596065-17596273,17597051-17597260,
17597360-17597489,17599664-17600402,17600411-17600531
Length = 940
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Frame = -3
Query: 669 YKHRMDSEQRVHHEIELLLN--IKIGEILAKVESWMNKYDADMEKI---ELKIQHKQNEH 505
Y+ D +R+ HEIELL + + IG L+ +E+ + ++ + +++ + Q Q+ +
Sbjct: 655 YRRTKDEVERLTHEIELLEDKILSIGS-LSTIEADLKQHSQEKDRLLSEYNRCQGTQSVY 713
Query: 504 QKIFDK-RVELEETLEK 457
Q K ++EL++T K
Sbjct: 714 QSNISKHKLELKQTQYK 730
>01_06_1530 -
38019997-38020011,38020705-38020867,38021126-38021211,
38021297-38022642,38022980-38023193
Length = 607
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -3
Query: 615 LNIKIGEILAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVE 478
LN + G+I ++ ++ DA +EKI+L+++H + F K +E
Sbjct: 481 LNSRYGQIFKDFDADIDTKDALLEKIKLELKHLERSKDD-FAKEIE 525
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 27.9 bits (59), Expect = 9.7
Identities = 26/111 (23%), Positives = 48/111 (43%)
Frame = -3
Query: 657 MDSEQRVHHEIELLLNIKIGEILAKVESWMNKYDADMEKIELKIQHKQNEHQKIFDKRVE 478
++S + EI+ L + E K + ++ E I K++H E QK+ D+R
Sbjct: 616 LNSAKARQMEIDSYLREREEEFEQKKAKELEHINSQKEMINTKLEHVAVELQKLKDER-- 673
Query: 477 LEETLEKHQKLIQNWQKFKDDREEARLFEEKMNNAAVTVQSWWRGLLVRLE 325
E TLE+ ++ Q + K E EK+ + S + V+++
Sbjct: 674 KEATLERERR-EQELSEIKGTIEALNNQREKLQEQRKLLHSDREAITVQIQ 723
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,688,165
Number of Sequences: 37544
Number of extensions: 276204
Number of successful extensions: 1038
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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