Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b20
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    72   6e-13
02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805     30   2.4  
06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066     29   4.2  
03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,426...    29   4.2  
08_02_0519 - 18097509-18097726,18097803-18097967,18098095-180983...    28   7.4  
07_03_0256 - 15875066-15877025,15877292-15877911                       28   7.4  
04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989...    28   9.7  

>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 71.7 bits (168), Expect = 6e-13
 Identities = 53/162 (32%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
 Frame = -3

Query: 767 EFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVELLRKIWFTKYARH 588
           E VT  ++ E+  +I  I  T PI+ L  +LV KG+    +Y +   +L  +WF  Y R 
Sbjct: 292 EVVTQQDKHEEVAFIEEIARTAPIKYLHRYLVLKGVAS-QDYEDFKRMLTSLWFDLYGRG 350

Query: 587 WTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYI------DKLDLS 426
             G    S AFE+VF+ E+K     G +    F   E +   +Y GYI      +  D  
Sbjct: 351 --GSSSSSSAFEHVFVGEIKGRRGQGENE---FYLEEANGNVDYQGYIFPRRRGESPDSE 405

Query: 425 GKGLILK--QHSVLSETKDAPEVNMFVGTSPELETALYTLCF 306
            + L ++   H VL            +G SPE E ALYTLCF
Sbjct: 406 TQLLTIQFEWHGVLKSVSST-----LIGVSPEFEVALYTLCF 442


>02_02_0540 - 11334744-11334832,11335445-11335494,11335574-11336805
          Length = 456

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 638 EQVELLRKIWFTKYARHWTGLCKCSCAFENVFMAELKSNEVLG 510
           E++  L  IW  K+  H TGLC      +N F+ E +  ++LG
Sbjct: 392 ERIYPLLMIWPPKFPAHLTGLCTLVYLVDNQFLLE-RGMKILG 433


>06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066
          Length = 489

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 405 AALGVERNERRARSEHVCWHLPRTGDRSVHALFH 304
           A +GV+  ER     H C++   TG+ SVH   H
Sbjct: 175 AFVGVQNWERHFWDAHACFYSSETGEWSVHINIH 208


>03_01_0577 + 4261249-4262055,4262149-4262203,4262293-4262468,
            4262554-4262718,4262811-4263178,4263225-4263861,
            4263952-4265844,4266325-4266672
          Length = 1482

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 300  GHETERVQSGLQFGGGANKHVHFGRVFRFAQHRVLLEDQS 419
            G+ET+  +SG+Q  GG  + +   R     Q R+LL D++
Sbjct: 1363 GYETQVGESGVQLSGGQKQRIAIARAI-VKQARILLLDEA 1401


>08_02_0519 -
           18097509-18097726,18097803-18097967,18098095-18098305,
           18099151-18099419,18100915-18101017
          Length = 321

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 298 ARTDLADCASTTYPSLSKQNRSKSKTYRSLTPLTQLGKKIIFKKTNK 158
           AR  +    +T Y S++K  RSK K  R+++P +   K I    TNK
Sbjct: 186 ARAAVKSLLATNYTSMAKIVRSKEKLIRAISP-SGYNKGIDSNPTNK 231


>07_03_0256 - 15875066-15877025,15877292-15877911
          Length = 859

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 178 LFFYQVG*AVSMTGKFSTLIDFVWIVKGMLLKRSLQG----LSGRVMKQS 315
           LF + +G   S+TGK   +    W +KG+ L   + G    L  RVM +S
Sbjct: 11  LFVHHLG---SLTGKAGVIKKMAWRIKGLQLSHRISGRIQELKARVMDES 57


>04_03_1048 -
           21998214-21998413,21998507-21998674,21998758-21998977,
           21999571-21999761,21999869-21999962,22000257-22000500,
           22001314-22001411,22001509-22001600,22001695-22001809,
           22001890-22002036,22003031-22003255
          Length = 597

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +3

Query: 555 EGATAFAKAGPVACVLREPNLSQQLNLFGILIQLSNAFVD*ESNEAPDGSRSKNSVD 725
           E ++AF +  PV   LR+P   ++ +L G            ESNE P    +K+SVD
Sbjct: 153 EQSSAFGRTHPVVAYLRKPKDGKKKSLLGDSS---------ESNEQPPPKENKDSVD 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,911,075
Number of Sequences: 37544
Number of extensions: 406101
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)