Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b20
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical pr...    81   9e-16
U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical pr...    58   5e-09
U49830-12|AAL16311.1|  363|Caenorhabditis elegans Hypothetical p...    30   2.2  
U58749-9|AAK18874.1|  349|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z30973-1|CAA83223.1|  424|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical ...    29   3.8  
L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical p...    29   5.0  
Z92827-5|CAB07325.1|  732|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z81139-6|CAH60791.2|  358|Caenorhabditis elegans Hypothetical pr...    28   8.8  
L14331-7|AAN65310.1|  510|Caenorhabditis elegans Hypothetical pr...    28   8.8  
L14331-6|AAN65311.1|  473|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    28   8.8  

>Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical
           protein K02A11.3 protein.
          Length = 307

 Score = 81.0 bits (191), Expect = 9e-16
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 8/204 (3%)
 Frame = -3

Query: 779 VIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVEL-LRKIWFT 603
           VI P      E+ E   +++ +L + P++ L  +   KG   +   P+     + ++WF+
Sbjct: 101 VIEPRVSQAEEKNEVGKFLDYVLESRPMQELYNWFKAKG-HPIATSPQVFRFWIGQLWFS 159

Query: 602 KYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSG 423
            Y+R   G    S  FE+VF+ E K+ E+ G+H+W+ F   E +   N+           
Sbjct: 160 HYSRA-LGRPDTS-GFEHVFIGEAKNGEISGMHNWVRFYVLENNRTENF---------DY 208

Query: 422 KGLILKQHSVLSETKDAPEV------NMFVGTSPELETALYTLCFMTRPDR-PCRLRFNN 264
           KG  +K+ ++++  K   +       ++ +GTSPE + ALYT+CF++R  R  C + F+ 
Sbjct: 209 KGFTVKRFNIMAALKFTWDGLLKRAGSILIGTSPEFDMALYTMCFLSRRGRETCDVEFDG 268

Query: 263 IPFTIQTKSIKVENLPVIDTAYPT 192
            P  I +  I  +N   I + YPT
Sbjct: 269 CPLQITSFEIMQQNKVYIGSIYPT 292


>U39995-3|AAF99995.2|  572|Caenorhabditis elegans Hypothetical
           protein M60.2 protein.
          Length = 572

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 44/174 (25%), Positives = 80/174 (45%)
 Frame = -3

Query: 728 YINTILATGPIRSLITFLVNKGITQLNEYPEQVELLRKIWFTKYARHWTGLCKCSCAFEN 549
           +++  +A+  ++   TFL  +G++  +    + +L   +WF  YAR+       SC F++
Sbjct: 115 FLDNFIASDAVKQAWTFLQAQGVSTSDPIDFRQQLYN-LWFLPYARNQA---LGSCGFKS 170

Query: 548 VFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLILKQHSVLSETKDAP 369
           VF+ E     V    +W+ F  +E   K NY G+  KL+    G+ +    V    +D  
Sbjct: 171 VFVGEATGTVVNRFANWVGFYIQENAGKFNYHGWFTKLN----GIAIDLQFVAGSDEDL- 225

Query: 368 EVNMFVGTSPELETALYTLCFMTRPDRPCRLRFNNIPFTIQTKSIKVENLPVID 207
           E +  + +SP  E A YT+  +T       ++   I   IQ  ++ V    V+D
Sbjct: 226 ETSFLLNSSPTFEFAAYTVAALTNTQPSILIQGEEI--DIQAPTLSVNKATVLD 277



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 2/160 (1%)
 Frame = -3

Query: 722 NTILATGPIRSLITFLVNKGITQLNEYPE-QVELLRKIWFTKYARHWTGLCKCSCAFENV 546
           NT  AT    S   +L +    + +     + ++L  +WF  Y R    L   S  +E+V
Sbjct: 399 NTFTATPMFASAFAYLQSINYKETSNLTNFKTKVLWPLWFGTYTRCKGPLG--SSGWEHV 456

Query: 545 FMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLILKQHSVLSETKDAPE 366
           F  E+KSNEV G H W+ +   +   K  Y GY    +        K +  L      P+
Sbjct: 457 FSGEIKSNEVDGQHDWVRYYTEQKADKMVYDGYYTHDENLIGTFQYKWNGALK-----PK 511

Query: 365 VNMFVGTSPELETALYTLCFMTRPD-RPCRLRFNNIPFTI 249
              F GTSP  + ++ ++C +   +   C  +  N P T+
Sbjct: 512 GGFFTGTSPAFDFSILSVCALAHGNGGNCHFKVTNYPITV 551


>U49830-12|AAL16311.1|  363|Caenorhabditis elegans Hypothetical
           protein C33F10.13 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 262 YPSLSKQNRSKSKTYRSLTPLTQLGKKIIFKKTN 161
           +P L   +RS  KT R +TPL       I KKTN
Sbjct: 7   FPILQLPSRSLQKTLRIMTPLNLFTLSFISKKTN 40


>U58749-9|AAK18874.1|  349|Caenorhabditis elegans Hypothetical
           protein B0496.2 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 662 ITQLNEYPEQVELLRKIWFTK---YARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLF 492
           +T+L + PE  E+ +K+  +       HWTG    SC  E  F  E+   E      W F
Sbjct: 6   VTKLFKLPEDSEIGKKVQISICDILGLHWTGFWTISCTAEGRF--EINCEE-KNRSRWKF 62

Query: 491 FAKREL 474
            A+ EL
Sbjct: 63  LAQVEL 68


>Z30973-1|CAA83223.1|  424|Caenorhabditis elegans Hypothetical
           protein B0284.2 protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 252 YPNKIDQSRKLTGH*HRLPNLVKK*Y 175
           Y N +++++ LTG  H LP+LVK  Y
Sbjct: 348 YENVLEKNKNLTGKIHGLPSLVKSNY 373


>AL032657-7|CAA21740.1|  340|Caenorhabditis elegans Hypothetical
           protein Y47H9C.7 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 320 YTLC--FMTRPDRPCRLRFNNIPFTIQTKS 237
           Y LC  FMT PD     R N++PF +  KS
Sbjct: 261 YKLCPFFMTNPDSLHTFRSNSLPFDLSAKS 290


>L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical
           protein R05D3.11 protein.
          Length = 1327

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = -3

Query: 356 FVGTSPELETALYTLCFMTRPDRPCRLRFNNIP---FTIQTKSIKVENLPVIDTAYPTW 189
           F  TSP     + TL  +     PCRL F++ P     +    ++  N  +IDTA   W
Sbjct: 279 FTVTSPASAILMLTLIRLREEGHPCRLDFDSNPTDDLLLNFDQVEFSN-NIIDTAVKYW 336


>Z92827-5|CAB07325.1|  732|Caenorhabditis elegans Hypothetical
           protein C29F7.6 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -1

Query: 295 RTDLADCASTTYPSLSKQNRS-KSKTYRSLTPLTQLGK-KIIFKKTNKSSLKGRTIVLLL 122
           R  L +  S    S SK  R  KSK   +LTP+ +  + KII +K  K+ L   T+ + L
Sbjct: 159 RQILKNLVSAVENSKSKNTRGRKSKIQSNLTPINEKSECKIIKRKNEKTPLLLLTVPMFL 218


>Z81139-6|CAH60791.2|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.8 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 199 TQLGKKIIFKKTNKSSLKGRTIVLLLYFLQHTFVY 95
           T +  + I K  N SSLKG  ++LL  FLQ  ++Y
Sbjct: 103 TNIWTEDIAKMLNVSSLKGLELMLLSGFLQWYYMY 137


>L14331-7|AAN65310.1|  510|Caenorhabditis elegans Hypothetical
           protein K12H4.7a protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 208 SMTGKFSTLIDFVWIVKGMLLKRSLQGLSGRVMKQSVYRAVSSSGEV 348
           +MT KF  L +  W+  G     +L   +     + VY AV SSG V
Sbjct: 168 AMTAKFPQLANAKWVTFGGSYSGALAAWTRAKHPELVYAAVGSSGPV 214


>L14331-6|AAN65311.1|  473|Caenorhabditis elegans Hypothetical
           protein K12H4.7b protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 208 SMTGKFSTLIDFVWIVKGMLLKRSLQGLSGRVMKQSVYRAVSSSGEV 348
           +MT KF  L +  W+  G     +L   +     + VY AV SSG V
Sbjct: 168 AMTAKFPQLANAKWVTFGGSYSGALAAWTRAKHPELVYAAVGSSGPV 214


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 782 NVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYP 639
           + + P F   +  T  T+Y+N I    P+   +  L + GITQL   P
Sbjct: 430 SAVPPMFSATSAPTPPTSYVNPIPPPAPLNFPMPSLSSIGITQLATPP 477


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,646,416
Number of Sequences: 27780
Number of extensions: 375091
Number of successful extensions: 973
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)