Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b18
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    36   0.008
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.92 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.92 
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    28   1.2  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   1.6  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   3.7  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   3.7  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    27   3.7  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    26   4.9  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   8.6  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   8.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   8.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   8.6  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   8.6  

>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = +2

Query: 158 LLVFFFTESFNALPNTEVTGKVNYHYLSVKSDIFVRILFCVVCSWVIFDLVLQCCFIVEF 337
           L+ ++F  S  A+ + +  GK+    L +   +F  I+  ++  ++IFD +L      E 
Sbjct: 353 LVDWYFVPSAVAVKDLDFIGKLRIAPLLMNKIMFPAIILYLIMFYLIFDCILNA--FAEI 410

Query: 338 FNTLNRGISGALWPTTT 388
               +RG  GA W T T
Sbjct: 411 TKFADRGFYGAWWNTVT 427


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 733 KNAKNK-TVQNVQPDDAAKSTYVPTNSKSSTGSR-PKETPER 614
           KN+K K T +    D A  S   PT S +S   + PKETPER
Sbjct: 451 KNSKAKYTAKQPSYDRAGSSLASPTKSSASPLVKAPKETPER 492


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -3

Query: 724 KNKTVQNVQPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDY-DLPKNTLHVIGSNP 548
           K+ +  + QP + + +   P+  K      P E  + Q + Y D  D P+N + + G   
Sbjct: 481 KDSSSTSTQPTEQSNAQQAPS-PKEEERPLPSEPSQNQPAEYRDTPDTPRNIMPLPGLMS 539

Query: 547 GEPKMSYTDPPKKLSKTM 494
            +  +  T+P     K +
Sbjct: 540 ADQPIKVTEPSNDADKAI 557


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
 Frame = +2

Query: 134 FPQFRISCLLVFFFTESFNALPNTEVTGKVNYHYLSVKSDIFVRILFC-------VVCSW 292
           F  F I  +L  F+T S   L N   T      Y + K+D+FVRI F        ++ SW
Sbjct: 366 FIWFHIVFVLAAFYTASL--LTNWNTTSV----YENQKNDVFVRIGFSYAAVWVKIITSW 419

Query: 293 VIFDLVLQCCFIVEFF 340
           V   L +  C    FF
Sbjct: 420 VCHGLYVWSCLAPVFF 435


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 30/91 (32%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
 Frame = -3

Query: 742 RRKKNAKNKTVQ-NVQPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLH 566
           RR   A N T+  NV    A  S+ V T + S   SR  +      S  S  + PKN LH
Sbjct: 474 RRSSTADNGTLSSNVPLYPAYNSSPVQTRT-SLFSSRLSKPSNPIVSSVSQANAPKNALH 532

Query: 565 VIGSNPGEPKMSYTDPPKKLSKTMKKFLRNM 473
            + S       S  + P  LS T  K L N+
Sbjct: 533 SMPS-----PTSLANLPSNLSDTQYKKLYNL 558


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 724  KNKTVQNVQ--PDDAAKSTYVPTNSKSSTGSRPKETPER 614
            + + ++N +  PD A+ +  VP N+ SS+ + PK+ P R
Sbjct: 1307 EEEEIENAEQSPDWASSTLQVPFNASSSSLATPKKEPLR 1345


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 718 KTVQNVQPDDAAKSTYVPTNSKSSTGSRPKET 623
           K V  V PD+    TY+  NS SS    P +T
Sbjct: 581 KPVVIVNPDENGLRTYLTKNSGSSFNGNPNDT 612


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/42 (21%), Positives = 27/42 (64%)
 Frame = -3

Query: 514 KKLSKTMKKFLRNMDKHKCDQYMKSSEKAVSKLTTMRGILKD 389
           K+    ++K+L  +++++ D+  KSS+K ++++   +  L++
Sbjct: 92  KRTFLQIRKYLETIEENEFDKVRKSSDKLINEIEKTKSSLRE 133


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -3

Query: 667 PTNSKSSTGSRPKETP 620
           PT+SKS+T S PK +P
Sbjct: 76  PTDSKSTTSSAPKNSP 91


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 462 LCLSMLRRNFFIVFDNFLGGSVYDIFGSPGLLP 560
           LCL    + F + FD  + G+ + +  S  LLP
Sbjct: 335 LCLLNYEKKFHVAFDAHVSGTFFGVVSSLFLLP 367


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = -3

Query: 310 YQVEYDPRTNYTKQNPDKNVTFNTQVMIIHFTGDLCVGQSVEALSKEKDQQAR 152
           YQ E DP +N +K     N  FNT      + G     + +    K +   AR
Sbjct: 207 YQSEADPVSNASKALKHVNDYFNTSYAPAEYYGSQTASKVIVTFGKSETVAAR 259


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 269 LFCVVCSWVIFDLVLQCCFIVEFFNTLNRGISGALWPTTTVF 394
           L  ++   V F       F++EFF      I GALW + T F
Sbjct: 302 LSALILDAVNFGCTFGGLFVLEFFGRRMPLIIGALWQSITFF 343


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 294 SYSTWYCSVASSLNSSTP*TEESPVHSGPQRPS 392
           SYS+   SV SS+ S+ P TEE PV + P+  S
Sbjct: 194 SYSSKSQSVNSSVTSNPPHTEE-PVAAKPEASS 225


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 670  VPTNSKSSTGSRPKETPERQASVYS-DYDLPKNTLHVIGSNPGEPKMSYTDPP 515
            V T ++++ G+     P    S +S    +   T  +I  NPG P  S + PP
Sbjct: 848  VTTGTETTEGTATYTEPTTFTSTFSFTTTIIGGTTTIIPVNPGNPSSSVSAPP 900


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 675 LTYQQTANPRQDPDQKKHQN-DKPRSTQ 595
           L  QQ + P+Q P Q++HQ   +P+  Q
Sbjct: 166 LQQQQQSQPQQQPQQQQHQQPQQPQPPQ 193


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 291 GSYSTWYCSVASSLNSSTP*TEESPVHSGPQRPS 392
           G +   Y +V  SL+  T   +++P+H  P RPS
Sbjct: 483 GQFMEIYLNV--SLSDVTEKLKDAPIHGAPDRPS 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,927
Number of Sequences: 5004
Number of extensions: 70472
Number of successful extensions: 285
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)