Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13b18
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0112 - 1386762-1386953,1387228-1387309,1387399-1387509,138... 34 0.10
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 34 0.10
09_02_0131 - 4693828-4694019,4694107-4694199,4694294-4694375,469... 31 0.97
10_07_0154 + 13487971-13488168,13488259-13488483,13488592-134904... 31 1.3
07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550 31 1.3
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 31 1.3
06_01_1155 + 9777611-9777808,9777899-9780132,9780218-9780469,978... 31 1.3
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 30 2.2
12_01_0927 + 9196230-9196427,9196499-9197190,9197317-9198351,919... 29 2.9
08_02_0194 + 14084828-14085025,14085116-14085788,14085855-140870... 29 2.9
05_01_0577 + 5159934-5160131,5160222-5162455,5162541-5162792,516... 29 2.9
05_01_0571 - 5067558-5067749,5068024-5068105,5068195-5068305,506... 29 2.9
01_06_0075 - 26201231-26201422,26201697-26201778,26201868-262019... 29 2.9
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881... 29 2.9
12_02_1139 - 26402332-26402367,26402915-26402953,26403136-264032... 29 3.9
12_01_0272 + 1985348-1986036,1986142-1988020 29 3.9
04_03_0709 + 18902507-18902704,18902795-18905028,18905114-189053... 29 3.9
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 29 3.9
01_06_0802 + 32087661-32087965,32088106-32088220,32088302-320884... 29 3.9
11_06_0069 + 19770182-19770379,19770470-19772703,19772789-197730... 29 5.2
11_04_0270 - 15590955-15591146,15591421-15591502,15591592-155917... 29 5.2
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375... 29 5.2
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 29 5.2
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 29 5.2
08_01_0440 + 3875422-3875619,3875710-3876382,3876449-3877943,387... 29 5.2
04_01_0365 - 4796780-4796971,4797246-4797327,4797417-4797527,479... 29 5.2
03_01_0120 - 938064-938105,938204-938377,938494-938568,938657-93... 29 5.2
02_01_0374 - 2702804-2702995,2703270-2703351,2703441-2703551,270... 29 5.2
12_02_0756 + 22839673-22839870,22839961-22842194,22842280-228425... 28 6.8
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 28 6.8
02_05_0546 + 29889861-29890182,29891057-29892798 28 6.8
12_02_0193 + 15242068-15242265,15242356-15244589,15244675-152449... 28 9.0
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 28 9.0
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 28 9.0
01_03_0109 + 12630644-12630731,12630744-12630775,12631136-126312... 28 9.0
>10_01_0112 -
1386762-1386953,1387228-1387309,1387399-1387509,
1387590-1387841,1387927-1388348,1388430-1390160,
1390251-1390448
Length = 995
Score = 34.3 bits (75), Expect = 0.10
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 739 RKKNAKNKTVQNVQPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVI 560
++K +N+T Q V+ D A + S S+ GSR K ER S LPK T +VI
Sbjct: 74 KRKAGRNRTEQEVEMDTATSAPERTETSTSAGGSRKKRRGER-----SKNKLPKETYNVI 128
Query: 559 G-SNPGEP 539
G+P
Sbjct: 129 ALDQDGKP 136
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 34.3 bits (75), Expect = 0.10
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGE-----PK 536
QP A+ ++ ++ + S P Q+++ +P+ T SNP E PK
Sbjct: 503 QPVQASPTSPAKQHAPPAPPSVQASPPTPQSALVEQVHIPEGTTSEPKSNPFEPRRIIPK 562
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K M S+K+V
Sbjct: 563 LISTYDPKEIDKDKEKFMFLAFRNSEKRKELAHVMSDSQKSV 604
>09_02_0131 -
4693828-4694019,4694107-4694199,4694294-4694375,
4694465-4694575,4694656-4694907,4694993-4697196
Length = 977
Score = 31.1 bits (67), Expect = 0.97
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ + +P T SN EP K
Sbjct: 524 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEEVHIPDGTTSEPKSNTLEPRRIIPK 583
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAVS 422
+ T PK++ K +KF+ RN +K K + S+K+VS
Sbjct: 584 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSVS 626
>10_07_0154 +
13487971-13488168,13488259-13488483,13488592-13490492,
13490578-13490829,13491110-13491191,13491466-13491657
Length = 949
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T+ SN EP K
Sbjct: 575 QPVQASPTSPAKQHAPPAPSSVQTSPPTPQSALVEQVHIPDGTISEPKSNTLEPRRIIPK 634
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKH-KCDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 635 LISTYDPKEIDKDKEKFMFSAFRNSEKRKKLAHVLSDSQKSV 676
>07_03_1063 + 23693549-23694833,23695102-23695146,23695495-23695550
Length = 461
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 5/109 (4%)
Frame = -3
Query: 715 TVQNVQPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLP-----KNTLHVIGSN 551
+V + AA P ++ S E E+ AS +D ++ +++ ++
Sbjct: 275 SVSTTESPAAAAVPATPQSNSSGNAVSSAEQKEKAASDAADAEVESSRTVQSSASPAANS 334
Query: 550 PGEPKMSYTDPPKKLSKTMKKFLRNMDKHKCDQYMKSSEKAVSKLTTMR 404
PG S D P + +++ ++ K D YMKS ++ L M+
Sbjct: 335 PGAMSESAVDKPPVIRVNLEQEVKVDQKEIMDMYMKSMQQFTESLAKMK 383
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 30.7 bits (66), Expect = 1.3
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
Frame = -3
Query: 697 PDDAAKSTYVPTNSKSSTGSRPKET--PERQASVYSDYDLPKNTLHVIGSNPGEP----- 539
P S PT + P +T P Q+++ + +P T SN EP
Sbjct: 610 PQPVQASPTSPTKQHAPPAPPPVQTSPPTPQSALVEEVHIPDGTTSEPKSNTLEPRRIIP 669
Query: 538 KMSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
K+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 670 KLISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>06_01_1155 +
9777611-9777808,9777899-9780132,9780218-9780469,
9780550-9780660,9780750-9780831,9781106-9781297
Length = 1022
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+S+ + +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSSLVEEVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>04_04_0294 +
24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 451 YMKSSEKAVSKLTTMRGILKDGRCG-PECTGDSSVQGVEEFNDEATLQYQVEYDPRTN 281
Y++ + + + TM L DG G TG++ +EE N +A Q V+YD TN
Sbjct: 440 YLRGRKDTIKCIVTM---LTDGSGGNANGTGNAGDNLLEELNRDAENQENVDYDDHTN 494
>12_01_0927 +
9196230-9196427,9196499-9197190,9197317-9198351,
9198437-9198688,9198769-9198879,9198969-9199050,
9199325-9199516
Length = 853
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGE-----PK 536
QP A+ ++ ++ + S P Q+++ +P T SN E PK
Sbjct: 442 QPVQASPTSLAKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLELSRIIPK 501
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 502 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 543
>08_02_0194 +
14084828-14085025,14085116-14085788,14085855-14087082,
14087435-14087686,14087767-14087877,14087967-14088048,
14088323-14088514
Length = 911
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ + +P T SN EP K
Sbjct: 589 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEEVHIPDGTTSEPKSNTLEPRRIIPK 648
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 649 LLSTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 690
>05_01_0577 +
5159934-5160131,5160222-5162455,5162541-5162792,
5162873-5162983,5163073-5163154,5163429-5163620
Length = 1022
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ + +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEEVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>05_01_0571 -
5067558-5067749,5068024-5068105,5068195-5068305,
5068386-5068637,5068723-5070956,5071047-5071244
Length = 1022
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ + +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEEVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>01_06_0075 -
26201231-26201422,26201697-26201778,26201868-26201978,
26202059-26202310,26202396-26204629,26204720-26204917
Length = 1022
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ + +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEEVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>01_05_0224 +
19485296-19485493,19485584-19487817,19487903-19488154,
19488235-19488345,19488435-19488516,19488791-19488982
Length = 1022
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ + +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEEVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>12_02_1139 -
26402332-26402367,26402915-26402953,26403136-26403287,
26403496-26403997,26404260-26404373,26404509-26404736,
26405375-26405457,26405677-26405824,26406778-26406861
Length = 461
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Frame = -3
Query: 736 KKNAKN--KTVQNVQPDDAAKSTYV-PTNSKSSTGSRPKETPERQASVYSDYDLPKNTLH 566
KKN N K+ ++ + +S V PTNS S+ +PK + E V S P N
Sbjct: 304 KKNGANHKKSHSDISGSSSGQSAGVLPTNSLGSSKLKPKPSDEISEEVNSQ---PSNLAS 360
Query: 565 VIGSNPGE-PKMSYTDPPKKLS 503
SNP E P K+LS
Sbjct: 361 RSTSNPKERPTQVNASSKKRLS 382
>12_01_0272 + 1985348-1986036,1986142-1988020
Length = 855
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 629 FWSGSCRGFAVCWYVSRFRGVIWLYILHSFVLGVLFP 739
F +GSCR F YV G + LYI F++ + P
Sbjct: 249 FAAGSCRSFKTSIYVIALVGAVLLYIAIQFMVFISEP 285
>04_03_0709 +
18902507-18902704,18902795-18905028,18905114-18905365,
18905446-18905556,18905646-18905727,18906002-18906193
Length = 1022
Score = 29.1 bits (62), Expect = 3.9
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEQVHIPNGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELANVLSDSQKSV 712
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = +2
Query: 608 GLSFWCFFWSG-SCRGFAV 661
GL FWC +SG +C GF V
Sbjct: 293 GLKFWCIVYSGFACNGFTV 311
>01_06_0802 +
32087661-32087965,32088106-32088220,32088302-32088421,
32089678-32089788,32090084-32090122,32090965-32091069,
32091149-32091187,32091923-32092015
Length = 308
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 411 VVNLLTAFSLLFMYWSHLCLSMLRRNFFIVFDNFLGGSVYDI 536
V+ L+ A +FM W S +RR+F I DNF G ++ +
Sbjct: 113 VLMLVGANVGVFMLWHLADPSFMRRHFMISLDNFKSGRLHTL 154
>11_06_0069 +
19770182-19770379,19770470-19772703,19772789-19773040,
19773121-19773231,19773321-19773402,19773677-19773868
Length = 1022
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>11_04_0270 -
15590955-15591146,15591421-15591502,15591592-15591702,
15591783-15592034,15592120-15594353,15594444-15594641
Length = 1022
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>10_07_0107 -
12936839-12937030,12937305-12937386,12937476-12937586,
12937667-12937918,12938004-12940237,12940328-12940525
Length = 1022
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 519 QPVQASPTSPAKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPK 578
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 579 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHILSDSQKSV 620
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 565 QPVQASPTSPAKKHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPK 624
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 625 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 666
>08_01_0440 +
3875422-3875619,3875710-3876382,3876449-3877943,
3878029-3878280,3878361-3878471,3878561-3878642,
3878917-3879108
Length = 1000
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 589 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPK 648
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 649 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 690
>04_01_0365 -
4796780-4796971,4797246-4797327,4797417-4797527,
4797608-4797859,4797945-4800115
Length = 935
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGE-----PK 536
QP A+ ++ ++ + S P Q+++ +P T SN E PK
Sbjct: 524 QPVQASPTSPAKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLELSRIIPK 583
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 584 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 625
>03_01_0120 -
938064-938105,938204-938377,938494-938568,938657-938737,
939035-939109,939230-939421
Length = 212
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -3
Query: 514 KKLSKTMKKF---LRNMDKHKCDQYMKSSEKAVSKLTTM 407
K+LSK+M+K LR+ DK++ DQY +++ +L +
Sbjct: 121 KRLSKSMRKLARELRDTDKYENDQYKSKMKQSDERLLAL 159
>02_01_0374 -
2702804-2702995,2703270-2703351,2703441-2703551,
2703632-2703883,2703969-2704798,2704895-2706202,
2706293-2706490
Length = 990
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 579 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPK 638
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 639 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 680
>12_02_0756 +
22839673-22839870,22839961-22842194,22842280-22842531,
22842612-22842722,22842812-22842893,22843168-22843359
Length = 1022
Score = 28.3 bits (60), Expect = 6.8
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELVHVLSDSQKSV 712
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/74 (20%), Positives = 30/74 (40%)
Frame = -3
Query: 739 RKKNAKNKTVQNVQPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVI 560
++K + K VQ +++ S P +TP+++ V + + + T +
Sbjct: 383 KQKQTQAKKVQAPVAQESSSSDESSEEDSDMESDEPAKTPQKKIYVSKSFFILQETAVSV 442
Query: 559 GSNPGEPKMSYTDP 518
GSN K +P
Sbjct: 443 GSNKSATKPGQEEP 456
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -3
Query: 709 QNVQPDDAAKSTYVPTNSKSSTGSRPKETPERQAS---VYSDYDLPKNTLH 566
+N +P D +S+ +P NSK TG++ ++P + S V D +TLH
Sbjct: 378 RNEKPPDELQSSGLPANSK--TGTQSGKSPNEEVSSVLVSGSADSTNDTLH 426
>12_02_0193 +
15242068-15242265,15242356-15244589,15244675-15244926,
15245007-15245117,15245207-15245288,15245563-15245754
Length = 1022
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEP-----K 536
QP A+ ++ ++ + S P Q+++ +P T SN EP K
Sbjct: 611 QPVQASPTSPTKQHAPPTPPSVQTSPPIPQSALVEQVHIPDGTTSEPKSNTLEPRRIIPK 670
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K +KF+ RN +K K + S+K+V
Sbjct: 671 LISTYDPKEIDKDKEKFMFSAFRNSEKRKELAHVLSDSQKSV 712
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Frame = -3
Query: 700 QPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGE-----PK 536
QP A+ ++ ++ + S P Q+++ +P T SN E PK
Sbjct: 524 QPVQASPTSPAKQHAPPAPPSVQTSPPTPQSALVEQVHIPDGTTSEPKSNTLELSRIIPK 583
Query: 535 MSYTDPPKKLSKTMKKFL----RNMDKHK-CDQYMKSSEKAV 425
+ T PK++ K KF+ RN +K K + S+K+V
Sbjct: 584 LISTYDPKEIDKDKDKFMFSAFRNSEKRKELAHVLSDSQKSV 625
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -3
Query: 709 QNVQP-DDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVIGSNPGEPKM 533
Q + P + + ++PT +K S G + KE + Y + P+N+ S+P E +
Sbjct: 335 QVIHPTSEICSNRWLPTANKRS-GKKHKENNDDSMGKYLEIGAPRNSSMEYQSSPREMSV 393
Query: 532 SYTDPPKKLSKTMKKFLRNMD 470
+ T+ + K R D
Sbjct: 394 NPTEKQHETLMPQSKTTRETD 414
>01_03_0109 +
12630644-12630731,12630744-12630775,12631136-12631217,
12631357-12631481,12631593-12631772,12632239-12632607
Length = 291
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -3
Query: 568 HVIGSNPGEPKMSYTDPPKKLSKTMKKFLRNMDKHKCDQYMKSSEKAVSKLTTMR 404
H++ + K+S D KK K+ + M++ + DQY KSS K + K++ ++
Sbjct: 210 HILEQIKKKQKLSVLDKTKKDWGEFKEENKGMEE-ELDQYKKSSNKYLDKVSFLQ 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,566,781
Number of Sequences: 37544
Number of extensions: 408606
Number of successful extensions: 1194
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -