Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13b18
(744 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39653-4|AAL56624.1| 649|Caenorhabditis elegans Prion-like-(q/n... 32 0.37
Z68114-7|CAA92161.1| 317|Caenorhabditis elegans Hypothetical pr... 31 0.65
Z69662-5|CAA93500.3| 449|Caenorhabditis elegans Hypothetical pr... 31 0.86
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL132863-10|CAN99717.1| 181|Caenorhabditis elegans Hypothetical... 31 1.1
Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical p... 30 1.5
Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z34802-1|CAA84336.1| 531|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical p... 29 2.6
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 29 2.6
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 29 2.6
AC006692-8|AAF39973.1| 431|Caenorhabditis elegans Hypothetical ... 29 2.6
Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical p... 28 6.1
AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical ... 28 6.1
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 28 6.1
U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of m... 28 8.0
U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st... 28 8.0
U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein. 28 8.0
CU457741-2|CAM36343.1| 574|Caenorhabditis elegans Hypothetical ... 28 8.0
>U39653-4|AAL56624.1| 649|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform b protein.
Length = 649
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -3
Query: 742 RRKKNAKNKTVQNVQPD--DAAKSTYVPTNSKSSTGSRPKETPERQAS 605
+RK AKN + VQ D + K P SKS SR K TP A+
Sbjct: 581 KRKSRAKNSAKRPVQTDAVETVKLEKKPAQSKSKKNSRSKSTPSSFAN 628
>Z68114-7|CAA92161.1| 317|Caenorhabditis elegans Hypothetical
protein F17A2.10 protein.
Length = 317
Score = 31.5 bits (68), Expect = 0.65
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 74 KYDHVLLLCWPKFIVFCKKCFPQFRISCLLVFFFTESFNALPNTEVTGKVNYHYLSVKSD 253
K+ ++L P FI + + I L + E F+A+ N+ + Y+++ +
Sbjct: 126 KFSVIILSLSPLFITMSAEAY--LTIEYHLPIEYQEKFSAI-NSNLGDHTVIGYIAL-DN 181
Query: 254 IFVRILFCVVCS-WVIFDLVLQC 319
I +I+FC +C +VIF L++ C
Sbjct: 182 IPAQIVFCTICGFFVIFPLIMFC 204
>Z69662-5|CAA93500.3| 449|Caenorhabditis elegans Hypothetical
protein F56D5.6 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -3
Query: 697 PDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYD-LPKNTLHVIGSNPGEPKMSYTD 521
P + + Y P + + + PE Q + +YD + K + PG PK+ YTD
Sbjct: 127 PQNGEQQDYKPYPNNQDLSPKAEFLPEGQETAGEEYDDVEKEPNESVPDVPGLPKLDYTD 186
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Frame = -3
Query: 736 KKNAKNKTVQN---VQPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLH 566
K+N K K V + V DD+ T+ P K T + KETP+++ + PK
Sbjct: 169 KENTKTKKVSDDEFVDSDDSF-DTFTPITVKKKTPEKRKETPKKKELPSVKKEFPKKQSI 227
Query: 565 VIGSNPGEPKMS----YTDPPKKLSKT 497
+ P+ DPPK S++
Sbjct: 228 PVKKEKETPQKKALSVKKDPPKVTSES 254
>AL132863-10|CAN99717.1| 181|Caenorhabditis elegans Hypothetical
protein Y37H2A.14 protein.
Length = 181
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Frame = -3
Query: 739 RKKNAKNKTVQNVQPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHVI 560
RKK +TV+ ST +P + PK+ P + S S K + V
Sbjct: 49 RKKRDSQRTVEKEHISHGIVSTEIPAADPKAHDESPKQMPLVKKSKKSQKKTNKEIVEVA 108
Query: 559 GSNPGE-PKM-SYTDPPKKLSKTMKK 488
E P++ S PKK K +KK
Sbjct: 109 PEVRDEAPQLESQVKKPKKTQKKLKK 134
>Z27079-10|CAD90180.1| 658|Caenorhabditis elegans Hypothetical
protein T05G5.9b protein.
Length = 658
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = -3
Query: 637 RPKETPERQASVYSDYDLPKNTLHVI--GSNPGEPKMSYTDPPKKLSKTMKKFLRNMDK- 467
RP P S Y + P +L + G E ++ + ++ K + L N+ K
Sbjct: 483 RPAVAPSDSVSCYDEPTQPDRSLEDVLYGDLGDEYRVESDELSEEKFKVILDQLENLKKT 542
Query: 466 -HKCDQYMKSSEKAVSKLTTMRGILKD 389
H + + +E A +LTT +LKD
Sbjct: 543 NHHVAELLSDAETANGRLTTQNSLLKD 569
>Z27079-9|CAA81596.2| 660|Caenorhabditis elegans Hypothetical
protein T05G5.9a protein.
Length = 660
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = -3
Query: 637 RPKETPERQASVYSDYDLPKNTLHVI--GSNPGEPKMSYTDPPKKLSKTMKKFLRNMDK- 467
RP P S Y + P +L + G E ++ + ++ K + L N+ K
Sbjct: 485 RPAVAPSDSVSCYDEPTQPDRSLEDVLYGDLGDEYRVESDELSEEKFKVILDQLENLKKT 544
Query: 466 -HKCDQYMKSSEKAVSKLTTMRGILKD 389
H + + +E A +LTT +LKD
Sbjct: 545 NHHVAELLSDAETANGRLTTQNSLLKD 571
>Z34802-1|CAA84336.1| 531|Caenorhabditis elegans Hypothetical
protein M88.1 protein.
Length = 531
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +2
Query: 173 FTESFNALPNTEVTG-KVN---YHYLSVKSDIFVRILFCVVCSWVIFDLVLQCCF 325
F F L N E G K+N YH L V + +F+ I + V++CCF
Sbjct: 466 FLAEFKTLDNLEPAGQKLNFFQYHSLDVITFLFIVIFIVFYIGYRFMRAVIRCCF 520
>Z99281-50|CAD56259.3| 837|Caenorhabditis elegans Hypothetical
protein Y57G11C.37 protein.
Length = 837
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 742 RRKKNAKNKTVQNVQPDDAAKSTYVPTNSKSSTGS-RPKETPERQASVYSD 593
R +N +NK +V+ ++ KS PT S + GS ET RQ SD
Sbjct: 513 RHVENVRNKRQNSVEQEEEEKSPRTPTTSFFTLGSPTTPETEVRQRKPNSD 563
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -3
Query: 622 PERQASVYSDYDLPKNTLHVIGSNPGEPKMSYT--DPPKKLSKTMKKFLRNMDKHKCDQY 449
P Q Y++ +T+H+ P EP SY+ DP + S++ RN + D
Sbjct: 325 PSVQLPYYNNIQPSSSTMHMPEFRPTEPPPSYSREDPYRSTSRSSLSRHRNRSRSPSDG- 383
Query: 448 MKSSEKAVSKLTTMRGILKDG 386
M S ++ S+ T R ++G
Sbjct: 384 MDRSGRSSSRRTHRRPESRNG 404
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -3
Query: 622 PERQASVYSDYDLPKNTLHVIGSNPGEPKMSYT--DPPKKLSKTMKKFLRNMDKHKCDQY 449
P Q Y++ +T+H+ P EP SY+ DP + S++ RN + D
Sbjct: 325 PSVQLPYYNNIQPSSSTMHMPEFRPTEPPPSYSREDPYRSTSRSSLSRHRNRSRSPSDG- 383
Query: 448 MKSSEKAVSKLTTMRGILKDG 386
M S ++ S+ T R ++G
Sbjct: 384 MDRSGRSSSRRTHRRPESRNG 404
>AC006692-8|AAF39973.1| 431|Caenorhabditis elegans Hypothetical
protein T28F12.1 protein.
Length = 431
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 71 NKYDHVLLLCWPKFIVFCKKCFPQFRISCLLVFFFTESFNALPNTEVTGK 220
N+ H + + KF +FCKK ++ + +F F +F + N++ +G+
Sbjct: 22 NQIQHNVTMFNFKFPIFCKKLKKHQTLAAIGLFIFLMTFTFVSNSQASGE 71
>Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical
protein F49E2.5g protein.
Length = 528
Score = 28.3 bits (60), Expect = 6.1
Identities = 28/108 (25%), Positives = 45/108 (41%)
Frame = -3
Query: 742 RRKKNAKNKTVQNVQPDDAAKSTYVPTNSKSSTGSRPKETPERQASVYSDYDLPKNTLHV 563
+ KKN KNK + AA T V +S+T E ++ + K T
Sbjct: 255 QEKKNKKNKRKSESENVPAASETPVEPVVESTT-PPATENKKKNKKDKKKSESEKVTEQP 313
Query: 562 IGSNPGEPKMSYTDPPKKLSKTMKKFLRNMDKHKCDQYMKSSEKAVSK 419
+ S P P++ +++ +T N K+K D+ SEKAV +
Sbjct: 314 VESAPAPPQV------EQVVETTPPASENKKKNKKDKKKSESEKAVEE 355
>AF078788-2|AAC26964.1| 311|Caenorhabditis elegans Hypothetical
protein ZC190.5 protein.
Length = 311
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 153 EILN*GKHFLQNTMNFGQQRSNTWSYLFQFGVFIK 49
E LN K++ T F RS TW ++ +FGV ++
Sbjct: 57 EYLNSSKYYAL-TPEFATLRSKTWEFIHEFGVCLQ 90
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = -3
Query: 730 NAKNKTVQNVQPDDAAKSTYVPTNSKSSTGSRPKETPERQA-SVYSDYDLPKNTLHVIGS 554
N K+ ++ +A + + + ++ + S+PK TP +A S + P+ + +
Sbjct: 58 NTSKKSATGLETPKSAGNLH--SQDRNLSCSKPKITPVWKAPSAFLKPWSPRKRFSSVET 115
Query: 553 NPGEPKMSYTDPPK 512
NPG P++ PP+
Sbjct: 116 NPGTPRIYLPPPPR 129
>U88165-5|AAK21392.1| 393|Caenorhabditis elegans Downstream of mes
(in same operon)protein 3 protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 181 LSKEKDQQARNSELRKTFLTKYNEFWPTK 95
L +EK +QA+N +L +T L K +W K
Sbjct: 175 LCEEKTEQAKNRDLNQTDLDKRMSYWGHK 203
>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 1 protein.
Length = 1616
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 622 PERQASVYSDYDLPKNTLHV-IGSNPGEPKMSYTDPPKKL--SKTMKKFLRNMDKH 464
PE +S+ +D P + + + S G K S +L SK KK+ RNMD+H
Sbjct: 1138 PEMPSSLRQLHDQPHREVQLSLTSTWGSQKKSEVTVNAQLQQSKEQKKYERNMDRH 1193
>U34893-1|AAB01720.1| 393|Caenorhabditis elegans DOM-3 protein.
Length = 393
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 181 LSKEKDQQARNSELRKTFLTKYNEFWPTK 95
L +EK +QA+N +L +T L K +W K
Sbjct: 175 LCEEKTEQAKNRDLNQTDLDKRMSYWGHK 203
>CU457741-2|CAM36343.1| 574|Caenorhabditis elegans Hypothetical
protein C42C1.2 protein.
Length = 574
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 265 DSVLCSLFVGHIRPGIAVLLHR*ILQHLEQR--NLRCTLAHNDR 390
D L SLF GH +AV+ + + +H++ R + T+ H DR
Sbjct: 171 DGALFSLFDGHAGSAVAVVASKCLHEHVKSRLCEVLDTILHMDR 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,853,200
Number of Sequences: 27780
Number of extensions: 401218
Number of successful extensions: 1517
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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