Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b18
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   0.32 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   5.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   7.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 577 NTLHVIGSNPGEPKMSYTDPPKKLSKTMKKFLRNMDKHKCDQYMKS 440
           N +   G  P  P   Y  PP K  K  +KF+   + +  D Y  S
Sbjct: 102 NKMSTRGKRPASP--GYVQPPTKHQKLDQKFIFPQENNYNDNYFYS 145


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -3

Query: 715  TVQNVQPDDAAKSTYVPTNSKSSTGSRPKETPERQASV 602
            T   + PD+  +  ++P +   S  SR  E  +++  V
Sbjct: 1473 TYPRINPDNHNEKLHIPKDKSVSVLSRENEAGQKEVKV 1510


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 313 QYQVEYDPRTNYTKQNPDKNV 251
           QY++ + P T +   N DKNV
Sbjct: 490 QYRLNHKPFTYHIVVNSDKNV 510


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 313 QYQVEYDPRTNYTKQNPDKNV 251
           QY++ + P T +   N DKNV
Sbjct: 490 QYRLNHKPFTYHIVVNSDKNV 510


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 313 QYQVEYDPRTNYTKQNPDKNV 251
           QY++ + P T +   N DKNV
Sbjct: 116 QYRLNHKPFTYHIVVNSDKNV 136


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 248 SDIFVRILFCVVCSWVIFDLVLQCCFIVEFFNTLN 352
           +++   I+FC+    V      Q   IV+FF  LN
Sbjct: 238 TNVMGMIVFCITFGLVAGQFGAQGKLIVDFFMILN 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,686
Number of Sequences: 438
Number of extensions: 4570
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)