Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b16
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    29   0.54 
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    27   3.8  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   8.9  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   8.9  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 622 FKFCPSWVFRRSSTARIPV*PRSWITTSRCTYPRLCKKPSLKSTRKAPKQPPP 464
           FKF P W+F  S  A + +   +  +   CT    C K  L+S ++      P
Sbjct: 454 FKFTPLWIFESSDLAALDIAWTADNSLILCTRNGTCWKRELRSKKREKSSSSP 506


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -1

Query: 429 RRTVHSIFCGQQTISGCDSRTRNSMLPCAFSRVEQSI-HKFIFYTY 295
           ++++ +  CG    S C    R   +PC      + I  KFIF  Y
Sbjct: 159 KKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIFPLY 204


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 384 GCDSRTRNSMLPCAFSRVEQSIHKFIFYTY 295
           G DS+TR S  P + S    S+H+ + Y +
Sbjct: 202 GNDSKTRQSFPPHSSSSSHNSLHEPVIYDF 231


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 752 NGLDGILQKLADGYDLTAELDKMFSTKVRVTVPKF 648
           N LD    KL+D  +L  E +K +ST    T+P F
Sbjct: 512 NNLDA---KLSDESELMIEKNKSYSTPASSTIPTF 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,239
Number of Sequences: 5004
Number of extensions: 57902
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)