Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13b16
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 42 7e-04
01_06_0824 - 32243495-32244319,32244449-32244859 41 0.001
11_01_0750 - 6315126-6315896,6316371-6316784 41 0.001
04_04_0620 + 26656072-26656417,26656585-26657396 41 0.001
11_01_0771 + 6453130-6454488 37 0.015
04_04_0619 + 26652923-26653267,26653440-26654273 37 0.015
11_02_0012 - 7346282-7347136,7347234-7347593 35 0.061
01_01_1152 + 9170628-9171899 35 0.061
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 33 0.25
11_06_0326 - 22382001-22383248 31 1.00
02_04_0567 - 23914330-23914461,23915016-23915136,23915954-239160... 30 2.3
03_06_0203 - 32337928-32338025,32338745-32338820,32338905-323389... 29 3.0
11_02_0011 - 7337618-7338496,7338596-7338991 29 4.0
11_06_0528 - 24681630-24681751,24681911-24682025,24682134-246821... 29 5.3
12_01_0981 + 9931542-9931606,9931779-9933105 28 7.0
06_03_0140 + 17160406-17160517,17160605-17160718,17160800-171609... 28 7.0
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 24 7.5
04_03_0430 + 15836839-15836973,15837267-15837359,15838975-15839139 28 9.3
04_03_0420 + 15703479-15703613,15703907-15703999,15705615-15705779 28 9.3
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 28 9.3
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.5 bits (93), Expect = 7e-04
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = -2
Query: 659 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEP--LYVSKAVQKAFIEVNXX 486
+PKFKI + +L LG+ F+ + + LT+++D+ E L+VS K+F+EVN
Sbjct: 356 LPKFKISFGFEASDLLKSLGLHLPFSSE-ADLTEMVDSPEGKNLFVSSVFHKSFVEVNEE 414
Query: 485 XXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAI 375
A V IT FVA+ PFL I
Sbjct: 415 GTEAAAATAAV----ITLRSAPIAEDFVADHPFLFLI 447
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = -2
Query: 659 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDND--EPLYVSKAVQKAFIEVN 492
+PKFKI +L LG+ +F + L +++D+ + L+VS K+FIEVN
Sbjct: 608 LPKFKISFGFGASGLLKGLGLPLLFGSEVD-LIEMVDSPGAQNLFVSSVFHKSFIEVN 664
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 41.1 bits (92), Expect = 0.001
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Frame = -2
Query: 758 EINGLDGILQKLADGYDLTAELDKMFSTKVRV---TVPKFKIETEIDLLQVLPKLGIQAI 588
E +GL +L+KL E + KV V VP+F + + + + L +LG++
Sbjct: 256 ERHGLPDMLRKLCSDPAALIESSAALTEKVPVGAFMVPRFTLSYKTNAAETLRQLGLRLP 315
Query: 587 FNRQNSGLTKILDND---EPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQ- 420
F + L++++++ E + VS ++F+EVN A+V++ G +
Sbjct: 316 FEYPGADLSEMVESSPEAEKIVVSAVYHESFVEVNEEGTEAAAATAVVMTLGCAAPSAPV 375
Query: 419 FIRYFVANRPFLAAI 375
+ FVA+ PF+ I
Sbjct: 376 HVVDFVADHPFMFLI 390
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Frame = -2
Query: 671 VRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQN--SGLTKILDNDEPLYVSKAVQKAFIE 498
V ++VP FKI +ID+ L +G++ F R+ S + K D+ PL++S + KA +E
Sbjct: 280 VGISVPNFKISFQIDVKDFLKDMGLELPFLREAEFSDMIKEDDSSGPLFLSDVLHKAVLE 339
Query: 497 VN 492
V+
Sbjct: 340 VD 341
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 40.7 bits (91), Expect = 0.001
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Frame = -2
Query: 659 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEP--LYVSKAVQKAFIEVNXX 486
VPKFK +++D L +LG+ A F+ + L+++ N P LYVS QK +EV+
Sbjct: 264 VPKFKFSSQLDAGGALAQLGLGAPFDPDAADLSRMAVNTPPAGLYVSTMRQKCAVEVDEE 323
Query: 485 XXXXXXXXAMVVSGGITSAGGQFIR----YFVANRPFLAAI 375
S G S G Q R FVA PF+ AI
Sbjct: 324 GTTAVEAMYSPSSPGY-SPGYQPPRPPPMSFVAEHPFMFAI 363
>11_01_0771 + 6453130-6454488
Length = 452
Score = 37.1 bits (82), Expect = 0.015
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 6/93 (6%)
Frame = -2
Query: 752 NGLDGILQKLAD--GYDLTAELDKMFSTKV-RVTVPKFKIETEIDLLQVLPKLGIQAIFN 582
+GL G+++++A G+ L + + V VPKFK+ ++ L +LG++ F+
Sbjct: 305 DGLRGLVERMASRPGF-LHEHMPAAWPVPVGEFRVPKFKVSCGGSVVGALEQLGLRLPFS 363
Query: 581 RQNSGLTKILDNDE---PLYVSKAVQKAFIEVN 492
+ + L+ ++++D PL+V KA IEVN
Sbjct: 364 PELADLSDMVEDDGSGWPLFVGDIQHKAVIEVN 396
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 37.1 bits (82), Expect = 0.015
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = -2
Query: 659 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDN----DEPLYVSKAVQKAFIEVN 492
VPKFK +E+D L KLG+ A F+ + L+++ + E LYVS QK +EV+
Sbjct: 271 VPKFKFSSELDARGALAKLGLGAPFDPLAADLSRMAVSVNTPPERLYVSAMRQKCAVEVD 330
Query: 491 XXXXXXXXXXAMVVSGGITSAGGQFIR--YFVANRPFLAAI 375
S + R FVA PF+ AI
Sbjct: 331 EEGTTAVEATYSCCSPTYSGPESPKPRPMSFVAEHPFMFAI 371
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 35.1 bits (77), Expect = 0.061
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = -2
Query: 659 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEVN 492
VP+FK+ ++ +VL +GI A F+ L+ ++D E + V K + +A +EVN
Sbjct: 292 VPRFKVSFYSEMNEVLKGMGIGAAFDVGKVDLSGMIDG-ELVVVEKVMHRAVVEVN 346
>01_01_1152 + 9170628-9171899
Length = 423
Score = 35.1 bits (77), Expect = 0.061
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Frame = -2
Query: 743 DGILQKLADGYDL---TAELDKMFSTKV-----RVTVPKFKIETEIDLLQVLPKLGIQAI 588
DG L KLAD YD+ T E K + R+ VPKFK + + + KLG+
Sbjct: 279 DGAL-KLADLYDMAVTTPEFIKKHTPAAEAPVRRLMVPKFKFSFKFEAKSDMRKLGVTRA 337
Query: 587 FNRQNSGLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQFIRY 408
F + ++ + L++++ +A IEV+ A+V+ +S
Sbjct: 338 F--AGGDFSGMVTGGDGLFIAEVYHQATIEVDELGTVAAASTAVVMMQKGSSLPPV---D 392
Query: 407 FVANRPFLAAIHVREIP---CFLAH 342
FVA+RPFL A+ V E+ FL H
Sbjct: 393 FVADRPFLFAV-VEELTGAVLFLGH 416
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 33.1 bits (72), Expect = 0.25
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Frame = -2
Query: 659 VPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDE--PLYVSKAVQKAFIEVNXX 486
+PKFKI + +L LG+Q F+ + LT ++ + E L+VS K+F++V+
Sbjct: 148 LPKFKISFGFEASDLLKILGLQLPFS-SKADLTGMVGSPERHNLFVSSLFHKSFVQVDEE 206
Query: 485 XXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAIH--VREIPCFLAH 342
A VVS SA FVA+ PFL I + + F+ H
Sbjct: 207 GTEAAAASAAVVS--FRSA--PVTVDFVADHPFLFLIREDMTGVVLFIGH 252
>11_06_0326 - 22382001-22383248
Length = 415
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 613 CPSWVFRRSSTARIPV*PRSWITTSRCTYPRLCKKPSLKSTRKAPKQPPPQP 458
C +V+R + AR + + R + +L P+ KS +AP PPP P
Sbjct: 222 CALFVYRAAEDARRALEEPYRVFEGRTLHCQLAADPARKSKPRAPPPPPPAP 273
>02_04_0567 -
23914330-23914461,23915016-23915136,23915954-23916048,
23916131-23916301,23917291-23917380,23917636-23918139
Length = 370
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 553 WITTSRCTYPRLCKKPSLKSTRKAPKQPPPQPWS*VAAS 437
W+ + RC + LC P P PPP P V+ S
Sbjct: 25 WLRSLRCPFTFLCPPPPPPPPPPPPPPPPPPPLEVVSPS 63
>03_06_0203 -
32337928-32338025,32338745-32338820,32338905-32338971,
32339181-32339275,32340062-32340151,32340293-32340340,
32340764-32341069
Length = 259
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 553 WIT-TSRCTYPRLCKKPSLKSTRKAPKQPPPQP 458
W+ T R PRL P+ + P QPPPQP
Sbjct: 39 WLKPTRRELCPRLVSSPAKLTDDATPPQPPPQP 71
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = -2
Query: 758 EINGLDGILQKLADGYDLTAELDKMFSTKVR----VTVPKFKIETEIDLLQVLPKLGIQA 591
E +GL ++ K+A ++ L T+ R + VP+FK+ + VL +G+ A
Sbjct: 271 ERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGVLQGMGVTA 330
Query: 590 IFNRQNSGLTKILDNDEP----LYVSKAVQKAFIEVN 492
F+ + L+ + + + L V + +A +EVN
Sbjct: 331 AFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVN 367
>11_06_0528 -
24681630-24681751,24681911-24682025,24682134-24682193,
24682454-24682513,24682606-24682668,24682752-24682798,
24682884-24683049,24683136-24683228,24683306-24683370,
24683462-24683537,24683644-24683709,24684114-24684203,
24684359-24684421,24684548-24684670
Length = 402
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -2
Query: 734 LQKLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNR 579
L K+ + L ++ V++ +I+ I+ ++ LPK G+Q +FNR
Sbjct: 161 LAKVGRQKEFEIALQRLRGKDADVSIEAAEIKEFIETIENLPKAGVQDLFNR 212
>12_01_0981 + 9931542-9931606,9931779-9933105
Length = 463
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 526 PRLCKKPSLKSTRKAPKQPPPQP 458
PR S+ S RK PK PP QP
Sbjct: 345 PRSANTSSVPSNRKTPKIPPKQP 367
>06_03_0140 +
17160406-17160517,17160605-17160718,17160800-17160945,
17161009-17161222,17161725-17161962,17162089-17162239,
17162534-17162863
Length = 434
Score = 28.3 bits (60), Expect = 7.0
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 471 GCFGAFLVDFNEGFLHSLGYVQRLVVIQDLGQTGILAVEDRLNTQLGQNLK*INLSFDLE 650
G AFL FNEG LG+ R +I + + + ED L + ++LK N+ D +
Sbjct: 188 GSLDAFL--FNEGKSAQLGWATRHNIIVGIARGLLYLHEDSLLKVVHRDLKASNVLLDDK 245
Query: 651 FRHRHSHFG 677
+ S FG
Sbjct: 246 MSPKISDFG 254
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 23.8 bits (49), Expect(2) = 7.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 459 GCGGGCFGAFLVDFNEGFLHS 521
GCGGG GA V+ ++ +H+
Sbjct: 768 GCGGGGCGAMAVESSKDDVHA 788
Score = 22.6 bits (46), Expect(2) = 7.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 438 DAATYDHGCGGGCFG 482
++A GCGGGC G
Sbjct: 725 ESAGCGSGCGGGCGG 739
>04_03_0430 + 15836839-15836973,15837267-15837359,15838975-15839139
Length = 130
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 698 ELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDE 540
+ DK+ K+RV PK ++ D + +L + + R +S + ILD E
Sbjct: 48 DADKLTDVKIRVDPPKLLVQAHGDQSEDQEQLSTRLGYGRVHSIIENILDKCE 100
>04_03_0420 + 15703479-15703613,15703907-15703999,15705615-15705779
Length = 130
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = -2
Query: 698 ELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDE 540
+ DK+ K+RV PK ++ D + +L + + R +S + ILD E
Sbjct: 48 DADKLTDVKIRVDPPKLLVQAHGDQSEDQEQLSTRLGYGRVHSIIENILDKCE 100
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 415 FDILWPTDHFWLRFTYAKFHASLRIFAGRTIDTQ--IYILYLLSNHCHCINLY 263
F++L+P+D F+YA + S ++ G ID + +Y ++ +C C L+
Sbjct: 211 FNLLFPSDSSGRHFSYAYY--SRKLSNGEVIDRKWLVYSKHVDKVYCFCCKLF 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,022,211
Number of Sequences: 37544
Number of extensions: 387785
Number of successful extensions: 1394
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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