Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13b16
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein ... 52 3e-07
AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or cys... 52 3e-07
AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or cys... 52 6e-07
AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin prote... 52 6e-07
U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein ... 51 1e-06
AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or cys... 51 1e-06
U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein ... 50 2e-06
AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or cys... 50 2e-06
U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein... 46 3e-05
AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or cys... 46 3e-05
U97008-18|AAB52317.2| 115|Caenorhabditis elegans Serpin protein... 44 1e-04
AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or cys... 43 2e-04
AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protei... 43 2e-04
U50301-8|AAB37049.1| 339|Caenorhabditis elegans Serpin protein ... 36 0.041
U41557-4|AAA83305.1| 298|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical pr... 31 0.89
DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagella... 31 0.89
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 30 2.1
Z68131-1|CAA92217.1| 467|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 28 6.3
U40797-5|AAB37548.1| 402|Caenorhabditis elegans Saposin-like pr... 28 6.3
L08403-7|AAA28019.2| 309|Caenorhabditis elegans Hypothetical pr... 28 8.3
>U50301-6|AAT81198.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform b protein.
Length = 366
Score = 52.4 bits (120), Expect = 3e-07
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
Frame = -2
Query: 728 KLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILD 549
K D + L + ST V V +PK+KIET++ L + L LGI+ F+ ++ L + D
Sbjct: 240 KTLDSATIQHLLSNVSSTSVNVQIPKWKIETKLGLEEALQSLGIKKAFD-NDADLGNMAD 298
Query: 548 NDEPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQFIR--YFVANRPFLAAI 375
LYVSK KA IEV+ A VVS SA I+ F A+ PFL +
Sbjct: 299 G---LYVSKVTHKALIEVD--EEGTTAAAATVVSFVRKSARPSAIKPIVFQADHPFLFML 353
Query: 374 HVREIPCFL 348
P FL
Sbjct: 354 TQTNHPIFL 362
>AY525084-1|AAS13532.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 52.4 bits (120), Expect = 3e-07
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 2/129 (1%)
Frame = -2
Query: 728 KLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILD 549
K D + L + ST V V +PK+KIET++ L + L LGI+ F+ ++ L + D
Sbjct: 240 KTLDSATIQHLLSNVSSTSVNVQIPKWKIETKLGLEEALQSLGIKKAFD-NDADLGNMAD 298
Query: 548 NDEPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQFIR--YFVANRPFLAAI 375
LYVSK KA IEV+ A VVS SA I+ F A+ PFL +
Sbjct: 299 G---LYVSKVTHKALIEVD--EEGTTAAAATVVSFVRKSARPSAIKPIVFQADHPFLFML 353
Query: 374 HVREIPCFL 348
P FL
Sbjct: 354 TQTNHPIFL 362
>AY525079-1|AAS13528.1| 359|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 359
Score = 51.6 bits (118), Expect = 6e-07
Identities = 43/134 (32%), Positives = 65/134 (48%)
Frame = -2
Query: 749 GLDGILQKLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNS 570
GL L+K+ Y + L+ + S+ V V +PKFKIE E+DL + L +GI+ IF + +
Sbjct: 229 GLVDALEKINGEY-IQNLLNDLKSSYVSVQIPKFKIEKELDLKETLEAIGIKEIF-AEGA 286
Query: 569 GLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRP 390
L+ I D +++S + KA IEV+ A V + FVA+ P
Sbjct: 287 DLSGIADK---VFISSGIHKAIIEVDEDGTTAAAASAFKVQLEMMIMAEP--TQFVADHP 341
Query: 389 FLAAIHVREIPCFL 348
FL A+ FL
Sbjct: 342 FLFAVLFENHTLFL 355
>AF026209-15|AAB71270.1| 359|Caenorhabditis elegans Serpin protein
2 protein.
Length = 359
Score = 51.6 bits (118), Expect = 6e-07
Identities = 43/134 (32%), Positives = 65/134 (48%)
Frame = -2
Query: 749 GLDGILQKLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNS 570
GL L+K+ Y + L+ + S+ V V +PKFKIE E+DL + L +GI+ IF + +
Sbjct: 229 GLVDALEKINGEY-IQNLLNDLKSSYVSVQIPKFKIEKELDLKETLEAIGIKEIF-AEGA 286
Query: 569 GLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRP 390
L+ I D +++S + KA IEV+ A V + FVA+ P
Sbjct: 287 DLSGIADK---VFISSGIHKAIIEVDEDGTTAAAASAFKVQLEMMIMAEP--TQFVADHP 341
Query: 389 FLAAIHVREIPCFL 348
FL A+ FL
Sbjct: 342 FLFAVLFENHTLFL 355
>U50301-7|AAB37055.1| 366|Caenorhabditis elegans Serpin protein 7,
isoform a protein.
Length = 366
Score = 50.8 bits (116), Expect = 1e-06
Identities = 38/127 (29%), Positives = 58/127 (45%)
Frame = -2
Query: 728 KLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILD 549
K D + L + ST V V +PK+KIET++ L + L LGI+ F+ ++ L + D
Sbjct: 240 KTLDSATIQHLLSNVSSTSVNVQIPKWKIETKLGLEEALQSLGIKKAFD-NDADLGNMAD 298
Query: 548 NDEPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAIHV 369
LYVSK KA IEV+ + +S + + F A+ PF +
Sbjct: 299 G---LYVSKVTHKALIEVDEEGTKAAAATTVSISLKSAMFVMEEPKDFTADHPFFFVLSK 355
Query: 368 REIPCFL 348
P F+
Sbjct: 356 DNHPLFV 362
>AY525083-1|AAS13531.1| 366|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 366
Score = 50.8 bits (116), Expect = 1e-06
Identities = 38/127 (29%), Positives = 58/127 (45%)
Frame = -2
Query: 728 KLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILD 549
K D + L + ST V V +PK+KIET++ L + L LGI+ F+ ++ L + D
Sbjct: 240 KTLDSATIQHLLSNVSSTSVNVQIPKWKIETKLGLEEALQSLGIKKAFD-NDADLGNMAD 298
Query: 548 NDEPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAIHV 369
LYVSK KA IEV+ + +S + + F A+ PF +
Sbjct: 299 G---LYVSKVTHKALIEVDEEGTKAAAATTVSISLKSAMFVMEEPKDFTADHPFFFVLSK 355
Query: 368 REIPCFL 348
P F+
Sbjct: 356 DNHPLFV 362
>U50301-5|AAT81199.1| 365|Caenorhabditis elegans Serpin protein 7,
isoform c protein.
Length = 365
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = -2
Query: 728 KLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILD 549
K D + L + ST V V +PK+KIET++ L + L LGI+ F+ ++ L + D
Sbjct: 240 KTLDSATIQHLLSNVSSTSVNVQIPKWKIETKLGLEEALQSLGIKKAFD-NDADLGNMAD 298
Query: 548 NDEPLYVSKAVQKAFIEVN 492
LYVSK KA IEV+
Sbjct: 299 G---LYVSKVTHKALIEVD 314
>AY525085-1|AAS13533.1| 365|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 365
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/79 (39%), Positives = 44/79 (55%)
Frame = -2
Query: 728 KLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILD 549
K D + L + ST V V +PK+KIET++ L + L LGI+ F+ ++ L + D
Sbjct: 240 KTLDSATIQHLLSNVSSTSVNVQIPKWKIETKLGLEEALQSLGIKKAFD-NDADLGNMAD 298
Query: 548 NDEPLYVSKAVQKAFIEVN 492
LYVSK KA IEV+
Sbjct: 299 G---LYVSKVTHKALIEVD 314
>U97008-19|AAB52318.2| 375|Caenorhabditis elegans Serpin protein 6
protein.
Length = 375
Score = 46.0 bits (104), Expect = 3e-05
Identities = 37/134 (27%), Positives = 59/134 (44%)
Frame = -2
Query: 749 GLDGILQKLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNS 570
GL LQ L D + + +T V + +PK+KIET + L + L +GI+ F ++
Sbjct: 243 GLSEALQNL-DSVTIQQLMSNTSNTLVNIAMPKWKIETALGLNRALMAVGIEKAFT-DSA 300
Query: 569 GLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRP 390
L+ D +Y+S+A KA IEV+ + S + F A+ P
Sbjct: 301 DLSNFADG---IYISQAAHKALIEVDEDGTVAAAATTISFSLTSVFIPAEEPIEFTADHP 357
Query: 389 FLAAIHVREIPCFL 348
FL + P F+
Sbjct: 358 FLFILSKDNHPLFI 371
>AY525082-1|AAS13530.1| 375|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 375
Score = 46.0 bits (104), Expect = 3e-05
Identities = 37/134 (27%), Positives = 59/134 (44%)
Frame = -2
Query: 749 GLDGILQKLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNS 570
GL LQ L D + + +T V + +PK+KIET + L + L +GI+ F ++
Sbjct: 243 GLSEALQNL-DSVTIQQLMSNTSNTLVNIAMPKWKIETALGLNRALMAVGIEKAFT-DSA 300
Query: 569 GLTKILDNDEPLYVSKAVQKAFIEVNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRP 390
L+ D +Y+S+A KA IEV+ + S + F A+ P
Sbjct: 301 DLSNFADG---IYISQAAHKALIEVDEDGTVAAAATTISFSLTSVFIPAEEPIEFTADHP 357
Query: 389 FLAAIHVREIPCFL 348
FL + P F+
Sbjct: 358 FLFILSKDNHPLFI 371
>U97008-18|AAB52317.2| 115|Caenorhabditis elegans Serpin protein 5
protein.
Length = 115
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/111 (29%), Positives = 53/111 (47%)
Frame = -2
Query: 680 STKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFI 501
+T V + +PK+KIET + L + L +GI+ F ++ L+ D +Y+S+A KA I
Sbjct: 6 NTLVNIAMPKWKIETALGLNRGLMAVGIEKAFT-DSADLSNFADG---IYISQAAHKALI 61
Query: 500 EVNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAIHVREIPCFL 348
EV+ + S G + I F A+ PFL + P F+
Sbjct: 62 EVDEDGTVAAAATTISSSVGSVQRTEKPIE-FTADHPFLFILSKDNHPLFI 111
>AY525080-1|AAS13529.1| 362|Caenorhabditis elegans serine or
cysteine protease inhibitorprotein.
Length = 362
Score = 43.2 bits (97), Expect = 2e-04
Identities = 35/115 (30%), Positives = 57/115 (49%)
Frame = -2
Query: 677 TKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIE 498
T + +PKF IE +++L L LGI IF+ ++ L+ + +N L +S+ V KA IE
Sbjct: 254 TFMNTQLPKFTIEKDLNLKSHLQTLGITDIFS-DSADLSGLAEN---LKISEGVHKAIIE 309
Query: 497 VNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAIHVREIPCFLAHFRG 333
VN M+ + +++ Q + F+A+ PF I P F+ F G
Sbjct: 310 VN-EEGTTAAAVTMMKAVPMSARMEQPVN-FIADHPFFFTITFLNHPIFVGVFNG 362
>AC087794-5|AAM48555.1| 362|Caenorhabditis elegans Serpin protein 3
protein.
Length = 362
Score = 43.2 bits (97), Expect = 2e-04
Identities = 35/115 (30%), Positives = 57/115 (49%)
Frame = -2
Query: 677 TKVRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIE 498
T + +PKF IE +++L L LGI IF+ ++ L+ + +N L +S+ V KA IE
Sbjct: 254 TFMNTQLPKFTIEKDLNLKSHLQTLGITDIFS-DSADLSGLAEN---LKISEGVHKAIIE 309
Query: 497 VNXXXXXXXXXXAMVVSGGITSAGGQFIRYFVANRPFLAAIHVREIPCFLAHFRG 333
VN M+ + +++ Q + F+A+ PF I P F+ F G
Sbjct: 310 VN-EEGTTAAAVTMMKAVPMSARMEQPVN-FIADHPFFFTITFLNHPIFVGVFNG 362
>U50301-8|AAB37049.1| 339|Caenorhabditis elegans Serpin protein 8
protein.
Length = 339
Score = 35.5 bits (78), Expect = 0.041
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = -2
Query: 671 VRVTVPKFKIETEIDLLQVLPKLGIQAIFNRQNSGLTKILDNDEPLYVSKAVQKAFIEV 495
V V +P ++ ETEIDL L +GI I N +++ + +N +++S+ + KA IEV
Sbjct: 260 VNVQIPIWRNETEIDLNSTLQAIGITKILN-ESAYIGNFAEN---VHISEFIHKAIIEV 314
>U41557-4|AAA83305.1| 298|Caenorhabditis elegans Hypothetical
protein C50F7.9 protein.
Length = 298
Score = 33.9 bits (74), Expect = 0.13
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = -3
Query: 427 EDSSFDILWPTDHFWL-RFTYAKFHASLRIFAGRTIDTQIYILYLLSNHCHCINLYLK*H 251
+D F +WP+ H + + +Y F +++F G + +++ +L+ N+ H N +
Sbjct: 55 DDQFFGRMWPSLHQVVDKCSYRHFRDRVKVF-GSSKQYILWLNWLVDNNEHMCNSIFIHN 113
Query: 250 GQS-----KIKKYNRKRVIV*MSKNETKT 179
+S + K+YNRK VI +S T+T
Sbjct: 114 SKSIAMEREFKRYNRKCVIYSLSDKHTET 142
>Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical
protein F46F6.4d protein.
Length = 298
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 526 PRLCKKPSLKSTRKAPKQPPPQ--PWS*VAASRLQEDSSFD 410
P + P+ S + PK PPP+ S + ASRL++DSS D
Sbjct: 22 PPMGSPPAYTSADEGPKTPPPRASAGSNMRASRLEDDSSND 62
>DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagellar
transport proteinvariant c protein.
Length = 298
Score = 31.1 bits (67), Expect = 0.89
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 526 PRLCKKPSLKSTRKAPKQPPPQ--PWS*VAASRLQEDSSFD 410
P + P+ S + PK PPP+ S + ASRL++DSS D
Sbjct: 22 PPMGSPPAYTSADEGPKTPPPRASAGSNMRASRLEDDSSND 62
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 514 KKPSLKSTRKAPKQPPPQPW 455
KKP+ S R A KQ P QPW
Sbjct: 347 KKPAKSSLRMAQKQKPDQPW 366
>Z68131-1|CAA92217.1| 467|Caenorhabditis elegans Hypothetical
protein B0395.2 protein.
Length = 467
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -3
Query: 703 RRNWTKCSRPKCE*RCRNSRSKLRLIYFKFCPSWVFRRS 587
R NW + + K + + +Y++FCPS+++R S
Sbjct: 187 RENWDRAMKRKIGGTIDAWPTMEQFLYYQFCPSFIYRDS 225
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 589 SSTARIPV*PRSWITTSRCTYPRLCKKPSLKSTRKAPKQPPPQPWS 452
SSTA+ P +TT T+ + + + ++P QP PW+
Sbjct: 633 SSTAKNTPSPAGSVTTINATFSKPSSRHPSEEVYRSPSQPTNVPWA 678
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 589 SSTARIPV*PRSWITTSRCTYPRLCKKPSLKSTRKAPKQPPPQPWS 452
SSTA+ P +TT T+ + + + ++P QP PW+
Sbjct: 633 SSTAKNTPSPAGSVTTINATFSKPSSRHPSEEVYRSPSQPTNVPWA 678
>U40797-5|AAB37548.1| 402|Caenorhabditis elegans Saposin-like
protein family protein8 protein.
Length = 402
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -3
Query: 535 CTYPRLCKKPSLKSTRKAPKQPPPQPW 455
C+ LC S + R+APKQP + W
Sbjct: 197 CSNMGLCSATSKPAAREAPKQPASEMW 223
>L08403-7|AAA28019.2| 309|Caenorhabditis elegans Hypothetical
protein F42H10.9 protein.
Length = 309
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 182 FCFVFTHLNYNSFSIILFNF 241
FCF+F HL ++F ILF F
Sbjct: 18 FCFLFEHLLLSAFFFILFPF 37
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573,575
Number of Sequences: 27780
Number of extensions: 336576
Number of successful extensions: 931
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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