Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b13
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   0.61 
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   3.2  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    24   5.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    24   5.6  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    23   7.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   7.5  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    23   9.9  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    23   9.9  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    23   9.9  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +2

Query: 59  IDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQS 238
           I  +  +C++ L  + MF   GSD+Y      + + AI      + F+  R+Y       
Sbjct: 706 ITQIYLNCSLDLRDSWMFHENGSDTYRSAQLQETFLAI-----LIRFYHIRLYGKKCKSL 760

Query: 239 EHFC 250
             FC
Sbjct: 761 YQFC 764


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -1

Query: 229 FGERVDPMEEKRQARENTINSVITF---GIMCAIIRI 128
           F E VD +   RQA+ N  NS++++    ++ AI+ +
Sbjct: 110 FRENVDVLYNLRQAQSNYKNSILSYKKGSVLSAILAV 146


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 6   TGFYYYCCFFVGTHSCG 56
           TG + Y C F G H+ G
Sbjct: 248 TGSFLYTCSFFGAHTLG 264


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 140 CTHYSKRYYAIDSVLACLTFFFHRIYSFSKGQS 238
           C    + YYAID+++A   F  +RI   SKG +
Sbjct: 473 CMETMEGYYAIDNLIAKCEFLGNRI---SKGMA 502


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 202 LPSDLLFLQRAI*TFLRLTNLLETIIFQ 285
           LPS LL+ ++ +  F  +TNL E  +++
Sbjct: 28  LPSTLLYDEKGLRLFDEITNLKEYYLYE 55


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 256  TNLLETIIFQFYLYCI 303
            TNLL+  +FQ YL C+
Sbjct: 1175 TNLLDLPMFQVYLGCV 1190


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/46 (23%), Positives = 17/46 (36%)
 Frame = +2

Query: 77  HCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLTFFFHRI 214
           HC +C +    F +      NC   +   Y    +L  +   FH I
Sbjct: 173 HCRLCNICVEKFDHHCIWINNCVGLNNARYFFLFLLCTIQLLFHSI 218


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 228 LEKE*IRWKKNVKHARTLSI 169
           + ++  RWKKN KH   L I
Sbjct: 20  ISEDHFRWKKNSKHLYNLLI 39


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +2

Query: 74  AHCTICLLKTTMFQYQGSDSYNCTHYSK 157
           A+CT C++    F ++  + Y  +++ K
Sbjct: 330 AYCTKCIINPYEFGFETGNYYTLSNFEK 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,114,652
Number of Sequences: 5004
Number of extensions: 18799
Number of successful extensions: 48
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)