Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b12
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S...    26   1.0  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    24   4.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    24   4.2  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    24   5.5  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    24   5.5  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    23   7.3  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    23   9.6  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    23   9.6  

>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
           Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 194 YSHEIRKDVRLENLKSLKLEDAWPFIRDEIEI 99
           +S  +RK VRL N KS++    W +I +++ +
Sbjct: 42  FSMHLRKHVRLPNYKSVQCRSPW-WIAEQVAV 72


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 179 RKDVRLENLKSLKLEDAWPFIRDEI 105
           RK+ +++  K L+LED   F R+E+
Sbjct: 309 RKNAKIQRDKDLELEDVRFFSREEV 333


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 186 MRVKRFYNYFKLLRH 230
           MRV+R  +Y KLLRH
Sbjct: 77  MRVEREISYLKLLRH 91


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  TNRDVTLYKSASVMCGIHTN 81
           T +DV +Y S  V+ GIH +
Sbjct: 212 TEKDVIIYSSNGVIYGIHVS 231


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 61  SLKLIYTKSRLCSCQTR 11
           SLKL++ K  +CSC  +
Sbjct: 386 SLKLLFLKFMICSCMVK 402


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 158 NLKSLKLEDAWPFIRDEIEIEIG 90
           NLKS K E  WP I   + + +G
Sbjct: 126 NLKSWKFEPPWPAIFGFVAVILG 148


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 271 YCLLFTFLKIY*QKCRRSLK 212
           YC LF   K Y   CR+  K
Sbjct: 229 YCTLFITSKAYSSTCRKEFK 248


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 195 KRFYNYFKLLRHFC 236
           +RFY +F +L H C
Sbjct: 215 RRFYEWFFVLHHMC 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,699
Number of Sequences: 5004
Number of extensions: 16118
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)