Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b11
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101...    29   4.6  
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567...    28   8.1  
01_07_0049 - 40748113-40748211,40749098-40749244                       28   8.1  

>10_01_0078 -
           1012031-1012084,1012998-1013105,1013610-1013661,
           1013926-1016603
          Length = 963

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +3

Query: 564 TIFPNNLYIDSRQLNEAEKIIDKILESGADRKIILDFHVIFFLLCIFFLK 713
           TI   +L  D + L EAE + DK+LESG     +   HV+F  +  FF K
Sbjct: 297 TILMASLCKDGK-LGEAENLFDKMLESG-----LFPDHVMFISIARFFPK 340


>07_01_0743 +
           5678086-5678098,5678436-5678560,5678666-5678800,
           5679128-5679200,5679581-5679654,5680292-5680396,
           5680637-5680881,5680965-5681052,5681202-5681244,
           5681319-5681475,5681648-5681776,5682012-5682084,
           5682281-5682445,5682530-5682544,5682651-5682780,
           5684517-5684651,5684880-5684945,5685088-5685170,
           5685503-5685549,5685736-5685814,5685914-5686006
          Length = 690

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 344 KNVNDKQTKKVL-IKKNSAELSIHILEQFEINESFYRDQPTNKPSRLDHHN*M*KYFFSR 520
           + +  K  K+VL +  +S  L +      +I +S YR+ P N P R D    + K FF  
Sbjct: 411 EEIISKVQKQVLELFPSSQGLELTWSSVVKIGQSLYRESPGNDPFRPDQKTPV-KNFFLS 469

Query: 521 N*QTRDLITTQD 556
              T+ +++ +D
Sbjct: 470 GSYTKQILSRKD 481


>01_07_0049 - 40748113-40748211,40749098-40749244
          Length = 81

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = +2

Query: 308 FTILSADIEYKLKNVNDKQTK-----KVLIKKNSAELSIHILEQFEINESFY 448
           +T L  D  YK K  ND  T      +VLI + SA L   IL   +IN S Y
Sbjct: 23  YTFLQGDDPYKRKYKNDIHTTLLSGYRVLIAEESALLDYEILILDDINVSTY 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,268,205
Number of Sequences: 37544
Number of extensions: 292331
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)