Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b11
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical p...    29   5.4  
Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical p...    29   5.4  
Z83115-2|CAE17889.1|  373|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z29095-6|CAA82354.1|  169|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL032663-6|CAA21766.2|  349|Caenorhabditis elegans Hypothetical ...    28   7.2  
AB000917-1|BAA22595.1|  169|Caenorhabditis elegans VHA-1 protein.      28   7.2  
Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z81047-7|CAB02834.1|  297|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z93388-15|CAB07667.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -3

Query: 438 SFISNCSRICI----ESSALFFFIKTFFVCLSLTFFSLYSISADKIVKPALMYFVIPQVH 271
           SFI     +CI    ES  L+F +K++FV  SL   S YS +  K+ +  + Y ++ Q  
Sbjct: 194 SFIGTFLCVCILFRSESLMLYFALKSYFVTKSL-MTSAYSANFQKL-QWQMFYALVSQTG 251

Query: 270 CYELKRFYLYVLVYNIC 220
              L   +   L+Y  C
Sbjct: 252 IPILFMQFPVTLIYITC 268


>Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.2 protein.
          Length = 369

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -3

Query: 438 SFISNCSRICI----ESSALFFFIKTFFVCLSLTFFSLYSISADKIVKPALMYFVIPQVH 271
           SFI     +CI    ES  L+F +K++FV  SL   S YS +  K+ +  + Y ++ Q  
Sbjct: 216 SFIGTFLCVCILFGSESLMLYFALKSYFVTKSL-MTSAYSANFQKL-QWQMFYALVSQTG 273

Query: 270 CYELKRFYLYVLVYNIC 220
              L   +   L+Y  C
Sbjct: 274 IPILFMQFPMTLIYITC 290


>Z93374-10|CAB07561.1|  356|Caenorhabditis elegans Hypothetical
           protein C06C6.1 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -3

Query: 438 SFISNCSRICI----ESSALFFFIKTFFVCLSLTFFSLYSISADKIVKPALMYFVIPQVH 271
           SFI     +CI    ES  L+F +K++FV  SL   S YS +  K+ +  + Y ++ Q  
Sbjct: 194 SFIGTFLCVCILFRSESLMLYFALKSYFVTKSL-MTSAYSANFQKL-QWQMFYALVSQTG 251

Query: 270 CYELKRFYLYVLVYNIC 220
              L   +   L+Y  C
Sbjct: 252 IPILFMQFPVTLIYITC 268


>Z83115-2|CAE17889.1|  373|Caenorhabditis elegans Hypothetical
           protein K11D2.5 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 29/89 (32%), Positives = 41/89 (46%)
 Frame = +3

Query: 405 LYIFLNNLK*MKAFTETSRQTSPAD*TTTTRCKNIFFQEISKQGT*LQHKTHLTIFPNNL 584
           L IF  NL+ + AF   SRQ + +D T  T   N     I       +  TH  I P   
Sbjct: 30  LPIFRRNLR-ISAF---SRQCTTSDDTLRTFAPNALMDRIVDDLK--KTGTHFVI-PGR- 81

Query: 585 YIDSRQLNEAEKIIDKILESGADRKIILD 671
             DS    E+ K+ +K+LE+G   + +LD
Sbjct: 82  --DSFARQESAKVFEKLLENGVKCEFLLD 108


>Z46787-7|CAA86745.1|  235|Caenorhabditis elegans Hypothetical
           protein C16C10.7 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 512 KNIFTSSCGGLICWACLSAGL 450
           K+   S CG L CW CLS  L
Sbjct: 34  KDAVVSLCGHLFCWPCLSQWL 54


>Z29095-6|CAA82354.1|  169|Caenorhabditis elegans Hypothetical
           protein R10E11.8 protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 542 LSPLFANFLKKNIFTSSCGGLICWAC-LSAG 453
           + P  AN+   N F+   GGL+C  C L AG
Sbjct: 91  VEPAGANYTINNAFSQFAGGLVCGLCGLGAG 121


>AL032663-6|CAA21766.2|  349|Caenorhabditis elegans Hypothetical
           protein Y75B12B.7 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 561 LTIFPNNLYIDSRQLNEAEKIIDKILESGADRKIILDFHVIFFLLCIFFLKT 716
           L +F     I SR + EA  +  K+++S +DR+      +I F LC FF+ T
Sbjct: 219 LIVFIFTSLILSRFIKEASSM--KMMKSKSDRQAEKTEGLILFTLCSFFIST 268


>AB000917-1|BAA22595.1|  169|Caenorhabditis elegans VHA-1 protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 542 LSPLFANFLKKNIFTSSCGGLICWAC-LSAG 453
           + P  AN+   N F+   GGL+C  C L AG
Sbjct: 91  VEPAGANYTINNAFSQFAGGLVCGLCGLGAG 121


>Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical
           protein C31A11.6 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 208 YYTYIVIE*FCGYEMLAFSLLRYFVFKIVAIVASLNRYDLQI 83
           YY Y+      G E      L YF+   V+++ ++NR+ + I
Sbjct: 74  YYEYLSYREMIGREFTMLGTLTYFIPMCVSVLMTMNRFFIVI 115


>Z81047-7|CAB02834.1|  297|Caenorhabditis elegans Hypothetical
           protein C41G6.9 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -3

Query: 438 SFISNCSRICIESSALFFFIKTFFVCLSLTFFSLYSISADKIVKPALMYFVIPQVHCYEL 259
           S   N  R+  +S+      K FFV LS T  ++ +++   ++    M  V P       
Sbjct: 213 SISRNLFRMAAKSATTIRMQKKFFVALSATHLAVSTLAFHGLLSTFTMIMVHPPYRRASK 272

Query: 258 KRFYL 244
           K FY+
Sbjct: 273 KMFYI 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,921,026
Number of Sequences: 27780
Number of extensions: 333753
Number of successful extensions: 837
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)