Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b11
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.5  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   8.1  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 257 KGFICMFWCITYVVYNILHIHSY 189
           KGF+   W I+  V+++++IH +
Sbjct: 160 KGFLRTRWSISGTVFDLINIHLF 182


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 99  RFNEATMATILKTKYLSREKANIS*PQNYSI 191
           R+++AT AT+++T  LS     +    +Y+I
Sbjct: 463 RYDDATNATVIQTSELSATFKGLKPSTDYAI 493


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 452 LCKSFHLFQIVQEYV*RVLHYFFLLKPSS 366
           +C S H  Q+  +   +V +YFF  + S+
Sbjct: 457 ICPSIHFAQLFADRGMKVYYYFFTQRTST 485


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 452 LCKSFHLFQIVQEYV*RVLHYFFLLKPSS 366
           +C S H  Q+  +   +V +YFF  + S+
Sbjct: 457 ICPSIHFAQLFADRGMKVYYYFFTQRTST 485


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
          protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 5  VCVFALTIFYIYLRIIFNFLH 67
          V V +L I   Y  I+FN LH
Sbjct: 19 VIVSSLIILISYALILFNILH 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,360
Number of Sequences: 438
Number of extensions: 4089
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)