Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b10
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   2.1  
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S...    26   4.7  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    26   6.3  
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...    26   6.3  

>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 424 KFMFSLLSRACFTGSWESGTSSRNSA 501
           +++FSL S++ FT +W   T  RNS+
Sbjct: 5   RYIFSLRSKSSFTKTWVPFTQIRNSS 30


>SPBC1773.03c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 566 FIARPATHLDSKLQVIGPEELAAELREEV 480
           ++AR A  L+ ++  +GPE++AA + E V
Sbjct: 196 YVARLAKELEDEILRVGPEKVAAFVAETV 224


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 382 VSAFASFKVVYRRSKFMFSLLSRACFTGS 468
           +S FA   ++Y  S+F F  LS A  TGS
Sbjct: 254 ISRFAEDLIIYSSSEFGFVTLSDAYSTGS 282


>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/26 (30%), Positives = 20/26 (76%)
 Frame = -1

Query: 113 QVHDEIDSLVKEYTQVIIRTSEDMKL 36
           +VH  ++ L+++Y ++ IRT+ +++L
Sbjct: 118 EVHQTLEPLLRDYRKLRIRTNSEIRL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,627
Number of Sequences: 5004
Number of extensions: 37484
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)