Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b10
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869...    30   2.1  
03_03_0137 - 14759337-14759508,14759616-14759813,14759917-147601...    29   3.7  

>03_02_0466 -
           8690469-8690522,8691008-8691113,8691216-8691457,
           8691477-8691546,8692224-8692499,8693058-8693137,
           8693408-8693489,8693566-8693663,8693868-8693936,
           8694015-8694113,8694681-8694737,8694874-8695039,
           8695152-8695196,8695286-8695347,8695425-8695532,
           8695719-8695769,8695843-8695944,8696362-8696448,
           8696560-8696823,8696977-8697189,8697337-8697398,
           8697517-8697849,8697943-8698138
          Length = 973

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 310 KYLCKNHRGRNCPVLIALLVTVSKVSAFASFKVV 411
           KY+CK  R +  P+ ++ L   + + +FA F +V
Sbjct: 510 KYICKKERFKTSPIALSALAEYTGMVSFAPFTIV 543


>03_03_0137 -
           14759337-14759508,14759616-14759813,14759917-14760116,
           14760197-14760310,14760386-14760572,14760984-14761225,
           14762326-14762424,14762505-14762836,14762931-14763039
          Length = 550

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 24  IGLY*FHIFRCANYNLSIFLYQRIYLVVYLFGVWLLMVGELC 149
           IGL  F IF CA+YNL        Y+ +YL G+   ++G  C
Sbjct: 500 IGLSVFLIF-CASYNLVFHGKNSFYINLYLQGLAFFLLGLNC 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,817,028
Number of Sequences: 37544
Number of extensions: 266296
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)