Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13b10
(722 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF520715-1|AAM55244.1| 4723|Drosophila melanogaster MICAL long i... 31 1.2
AE014297-1071|AAO41537.1| 4723|Drosophila melanogaster CG33208-P... 31 1.2
AE014297-1070|AAO41536.1| 4723|Drosophila melanogaster CG33208-P... 31 1.2
AE014297-1069|AAO41535.1| 4723|Drosophila melanogaster CG33208-P... 31 1.2
AE014297-1068|AAO41534.1| 4723|Drosophila melanogaster CG33208-P... 31 1.2
AE014297-1067|AAO41533.1| 4723|Drosophila melanogaster CG33208-P... 31 1.2
AJ238947-1|CAB64936.1| 496|Drosophila melanogaster heterogeneou... 31 2.1
AF275629-1|AAF78762.1| 508|Drosophila melanogaster bancal prote... 31 2.1
AF142631-1|AAF00596.1| 490|Drosophila melanogaster hnRNP K prot... 31 2.1
AE013599-3038|AAM68390.2| 413|Drosophila melanogaster CG13425-P... 31 2.1
AE013599-3036|AAF57450.2| 496|Drosophila melanogaster CG13425-P... 31 2.1
AE013599-3035|AAM68389.2| 502|Drosophila melanogaster CG13425-P... 31 2.1
BT001642-1|AAN71397.1| 465|Drosophila melanogaster RE40994p pro... 29 8.5
AY121626-1|AAM51953.1| 605|Drosophila melanogaster GH20068p pro... 29 8.5
AE014297-3463|AAF56239.2| 516|Drosophila melanogaster CG5463-PA... 29 8.5
AE013599-2758|AAF57644.2| 605|Drosophila melanogaster CG33147-P... 29 8.5
>AF520715-1|AAM55244.1| 4723|Drosophila melanogaster MICAL long
isoform protein.
Length = 4723
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 512 EELAAELREEVPDSQDPVKQALLNSENINFDRLYTTLKDANADTLLTVTKRAISTGQFLP 333
+EL + EE+ P E+I+ D L TT+ + + +TV KR S Q +
Sbjct: 2200 DELFQSMVEEMEQEPQPTAIVEPPEEDIDADSLCTTISKSPSAQPVTVVKRGSSEDQSIE 2259
Query: 332 RWFLH 318
+ F H
Sbjct: 2260 KLFSH 2264
>AE014297-1071|AAO41537.1| 4723|Drosophila melanogaster CG33208-PH,
isoform H protein.
Length = 4723
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 512 EELAAELREEVPDSQDPVKQALLNSENINFDRLYTTLKDANADTLLTVTKRAISTGQFLP 333
+EL + EE+ P E+I+ D L TT+ + + +TV KR S Q +
Sbjct: 2203 DELFQSMVEEMEQEPQPTAIVEPPEEDIDADSLCTTISKSPSAQPVTVVKRGSSEDQSIE 2262
Query: 332 RWFLH 318
+ F H
Sbjct: 2263 KLFSH 2267
>AE014297-1070|AAO41536.1| 4723|Drosophila melanogaster CG33208-PG,
isoform G protein.
Length = 4723
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 512 EELAAELREEVPDSQDPVKQALLNSENINFDRLYTTLKDANADTLLTVTKRAISTGQFLP 333
+EL + EE+ P E+I+ D L TT+ + + +TV KR S Q +
Sbjct: 2203 DELFQSMVEEMEQEPQPTAIVEPPEEDIDADSLCTTISKSPSAQPVTVVKRGSSEDQSIE 2262
Query: 332 RWFLH 318
+ F H
Sbjct: 2263 KLFSH 2267
>AE014297-1069|AAO41535.1| 4723|Drosophila melanogaster CG33208-PF,
isoform F protein.
Length = 4723
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 512 EELAAELREEVPDSQDPVKQALLNSENINFDRLYTTLKDANADTLLTVTKRAISTGQFLP 333
+EL + EE+ P E+I+ D L TT+ + + +TV KR S Q +
Sbjct: 2203 DELFQSMVEEMEQEPQPTAIVEPPEEDIDADSLCTTISKSPSAQPVTVVKRGSSEDQSIE 2262
Query: 332 RWFLH 318
+ F H
Sbjct: 2263 KLFSH 2267
>AE014297-1068|AAO41534.1| 4723|Drosophila melanogaster CG33208-PD,
isoform D protein.
Length = 4723
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 512 EELAAELREEVPDSQDPVKQALLNSENINFDRLYTTLKDANADTLLTVTKRAISTGQFLP 333
+EL + EE+ P E+I+ D L TT+ + + +TV KR S Q +
Sbjct: 2203 DELFQSMVEEMEQEPQPTAIVEPPEEDIDADSLCTTISKSPSAQPVTVVKRGSSEDQSIE 2262
Query: 332 RWFLH 318
+ F H
Sbjct: 2263 KLFSH 2267
>AE014297-1067|AAO41533.1| 4723|Drosophila melanogaster CG33208-PC,
isoform C protein.
Length = 4723
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -1
Query: 512 EELAAELREEVPDSQDPVKQALLNSENINFDRLYTTLKDANADTLLTVTKRAISTGQFLP 333
+EL + EE+ P E+I+ D L TT+ + + +TV KR S Q +
Sbjct: 2203 DELFQSMVEEMEQEPQPTAIVEPPEEDIDADSLCTTISKSPSAQPVTVVKRGSSEDQSIE 2262
Query: 332 RWFLH 318
+ F H
Sbjct: 2263 KLFSH 2267
>AJ238947-1|CAB64936.1| 496|Drosophila melanogaster heterogeneous
nuclear ribonucleoprotein(hnRNP) protein.
Length = 496
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 539 DSKLQVIGPEELAAE-LREEVPDSQD-PVKQALLNSENINFDRLY 411
D +Q +G + E +RE + ++D P+K A+ N + +NFDR+Y
Sbjct: 141 DRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVY 185
>AF275629-1|AAF78762.1| 508|Drosophila melanogaster bancal protein
protein.
Length = 508
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 539 DSKLQVIGPEELAAE-LREEVPDSQD-PVKQALLNSENINFDRLY 411
D +Q +G + E +RE + ++D P+K A+ N + +NFDR+Y
Sbjct: 141 DRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVY 185
>AF142631-1|AAF00596.1| 490|Drosophila melanogaster hnRNP K protein
homolog protein.
Length = 490
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 539 DSKLQVIGPEELAAE-LREEVPDSQD-PVKQALLNSENINFDRLY 411
D +Q +G + E +RE + ++D P+K A+ N + +NFDR+Y
Sbjct: 141 DRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVY 185
>AE013599-3038|AAM68390.2| 413|Drosophila melanogaster CG13425-PB,
isoform B protein.
Length = 413
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 539 DSKLQVIGPEELAAE-LREEVPDSQD-PVKQALLNSENINFDRLY 411
D +Q +G + E +RE + ++D P+K A+ N + +NFDR+Y
Sbjct: 58 DRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVY 102
>AE013599-3036|AAF57450.2| 496|Drosophila melanogaster CG13425-PA,
isoform A protein.
Length = 496
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 539 DSKLQVIGPEELAAE-LREEVPDSQD-PVKQALLNSENINFDRLY 411
D +Q +G + E +RE + ++D P+K A+ N + +NFDR+Y
Sbjct: 141 DRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVY 185
>AE013599-3035|AAM68389.2| 502|Drosophila melanogaster CG13425-PC,
isoform C protein.
Length = 502
Score = 30.7 bits (66), Expect = 2.1
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -1
Query: 539 DSKLQVIGPEELAAE-LREEVPDSQD-PVKQALLNSENINFDRLY 411
D +Q +G + E +RE + ++D P+K A+ N + +NFDR+Y
Sbjct: 147 DRVVQTVGKQSQVIEAVREVITLTRDTPIKGAIHNYDPMNFDRVY 191
>BT001642-1|AAN71397.1| 465|Drosophila melanogaster RE40994p
protein.
Length = 465
Score = 28.7 bits (61), Expect = 8.5
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -1
Query: 554 PATHLDSKLQVIGPEEL--AAELREEVPDSQDPVKQALLNSENINFDRLYTTLKD-ANAD 384
P H++ K + E+L A L EE+P+ + +Q L+ N+N + + + D
Sbjct: 326 PPLHVNLKPGSMSTEDLLSVAALSEEIPELPEDTRQRLVEQHNLNAETAIILVNEPILLD 385
Query: 383 TLLTVTK 363
L++T+
Sbjct: 386 HFLSITR 392
>AY121626-1|AAM51953.1| 605|Drosophila melanogaster GH20068p
protein.
Length = 605
Score = 28.7 bits (61), Expect = 8.5
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 289 QPA-PSTSKYLCKNHRGRNCPVLIALLVTVSKVSAFASFKVVYRRSKFMFSLLSRACFTG 465
+PA P TS C G + P L + +TV +S F +F V+Y + + ++A
Sbjct: 115 RPAGPDTSPTDCILVVGVSRPKLAVVFLTVMLISLFLTFHVLYDSAVYNIQ-AAQAVHER 173
Query: 466 SWESGTSSRNSAANSSGPITCSLESRCVAGRA 561
S T+S ++ A+SS + S S AG A
Sbjct: 174 HRLSMTASASALASSSSSSSNSGSSFSSAGGA 205
>AE014297-3463|AAF56239.2| 516|Drosophila melanogaster CG5463-PA
protein.
Length = 516
Score = 28.7 bits (61), Expect = 8.5
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -1
Query: 554 PATHLDSKLQVIGPEEL--AAELREEVPDSQDPVKQALLNSENINFDRLYTTLKD-ANAD 384
P H++ K + E+L A L EE+P+ + +Q L+ N+N + + + D
Sbjct: 302 PPLHVNLKPGSMSTEDLLSVAALSEEIPELPEDTRQRLVEQHNLNAETAIILVNEPILLD 361
Query: 383 TLLTVTK 363
L++T+
Sbjct: 362 HFLSITR 368
>AE013599-2758|AAF57644.2| 605|Drosophila melanogaster CG33147-PA
protein.
Length = 605
Score = 28.7 bits (61), Expect = 8.5
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 289 QPA-PSTSKYLCKNHRGRNCPVLIALLVTVSKVSAFASFKVVYRRSKFMFSLLSRACFTG 465
+PA P TS C G + P L + +TV +S F +F V+Y + + ++A
Sbjct: 115 RPAGPDTSPTDCILVVGVSRPKLAVVFLTVMLISLFLTFHVLYDSAVYNIQ-AAQAVHER 173
Query: 466 SWESGTSSRNSAANSSGPITCSLESRCVAGRA 561
S T+S ++ A+SS + S S AG A
Sbjct: 174 HRLSMTASASALASSSSSSSNSGSSFSSAGGA 205
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,632,173
Number of Sequences: 53049
Number of extensions: 439174
Number of successful extensions: 1069
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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