Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b10
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical...    31   0.83 
U40800-14|AAA81498.4|  727|Caenorhabditis elegans Hypothetical p...    29   4.4  
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.    28   7.8  
AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln (ne...    28   7.8  

>AC025715-10|ABJ99061.1| 1187|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.12a protein.
          Length = 1187

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -1

Query: 494 LREEVPDSQDPVKQALLNSENINFDRLYTTLKDANADTLLTVTKRAISTGQFLPRWFLH- 318
           L + V +SQ P  Q +   EN  F +LY+   D  + +L  +  +  +  Q   ++F+H 
Sbjct: 452 LADVVDESQTPA-QVVYEEEN--FPKLYSQFMDLRSKSLAGLKTQGFTESQIETKYFMHM 508

Query: 317 RYLEVDGA 294
           RY + D A
Sbjct: 509 RYEKTDTA 516


>U40800-14|AAA81498.4|  727|Caenorhabditis elegans Hypothetical
           protein D2096.11 protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 613 SPRRSPRCAWRVPTTPS*RDPPR 545
           SPR++P+  +R+P TPS + P R
Sbjct: 648 SPRKTPQRPFRIPRTPSDKTPGR 670


>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
            protein M116.5 protein.
          Length = 1064

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 613  SPRRSPRCAWRVPTTPS*RDPPR 545
            SPR++P+  +R+P TPS + P R
Sbjct: 981  SPRKTPQRPFRIPRTPSDKTPGR 1003


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +1

Query: 370 TVSKVSAFASFKVVYRRSKFMFSLLSRACFTGSWESGTSSRNSAANSSGPITCS 531
           TVS VS+  S  +    +  ++S LS +  TGS  S  ++ +S +++SGP T S
Sbjct: 581 TVSTVSSQPSTYIPVSSASSIYSTLSGS--TGSTASPGTTESSGSSTSGPSTIS 632


>AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 45  IFRCAN-YNLSIFLYQRIYLVVYLFGVWL 128
           +F CA+ +NLS+    R Y V+Y FGV++
Sbjct: 278 VFDCAHGFNLSLHSQYRWYQVLYQFGVFV 306


>AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.3
           protein.
          Length = 417

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 45  IFRCAN-YNLSIFLYQRIYLVVYLFGVWL 128
           +F CA+ +NLS+    R Y V+Y FGV++
Sbjct: 278 VFDCAHGFNLSLHSQYRWYQVLYQFGVFV 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,568
Number of Sequences: 27780
Number of extensions: 221936
Number of successful extensions: 613
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)