Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b10
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   0.96 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   8.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 84  YQRIYLVVYLFGVWLLM 134
           +QR++L V LFGV LL+
Sbjct: 3   WQRVFLAVGLFGVLLLL 19


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 361 LLVTVSKVSAFASFKVVYRRSKFMFSLLSRACFTGSWESGTSS 489
           L ++ S V AFA+  +V + SKF    +  +   G    GT++
Sbjct: 246 LSISASCVIAFATSALVSKDSKFNMVHIQNSTLAGGVAIGTAA 288


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 557 RPATHLDSKLQVIGPEELAAELREEVPDSQDPV 459
           RPA+   + L + G      EL+ ++ DSQ P+
Sbjct: 843 RPASSTAATLVLSGCPSNMMELQVDIADSQQPL 875


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 473 SQDPVKQALLNSENINFDRLYTTLKDANADTLL 375
           SQ  ++   +  E++N D+LYT       DTL+
Sbjct: 442 SQSELQMPGVKFESVNIDKLYTYFD--KCDTLI 472


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 473 SQDPVKQALLNSENINFDRLYTTLKDANADTLL 375
           SQ  ++   +  E++N D+LYT       DTL+
Sbjct: 442 SQSELQMPGVKFESVNIDKLYTYFD--KCDTLI 472


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 275 VTHARSPLRQPPNIYAKTTAVE 340
           VTH  S L  PP I+  T  ++
Sbjct: 93  VTHDGSCLYVPPGIFGSTCKID 114


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 137  DHQQPYAKQVHDEIDS 90
            DH++P ++ ++  IDS
Sbjct: 1325 DHRRPLSEHIYSSIDS 1340


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +1

Query: 286 TQPAPSTSKYLCKNHRGRNCPV 351
           T P  ST   + +NH    C V
Sbjct: 330 TSPMTSTKSTIVRNHLNSTCSV 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,942
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)