Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b08
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104     30   2.2  
04_03_0139 + 11727207-11727359,11727534-11727674,11728607-11728804     29   3.8  
02_02_0735 - 13504360-13504516,13504682-13504797,13505030-135051...    29   3.8  
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    29   5.0  

>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
          Length = 744

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -1

Query: 622 VCNKNQTIYLCNCALISLND*IDLNMVSVMCCTLVSIFHLYVNKKKRTKCNIHYHKNG 449
           VC+     YLC C L   +D   ++ +++M  T V    +   + K+ K + ++ +NG
Sbjct: 332 VCHNTPGGYLCKCKLGKRSDGTSVSAIALMALTCVLAMQIQRKRHKKDK-DEYFKQNG 388


>04_03_0139 + 11727207-11727359,11727534-11727674,11728607-11728804
          Length = 163

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 104 VIDVLIQCIQRNFFLLVTNLFDKH 175
           V+D+++  + RNFF L+ N+  +H
Sbjct: 75  VVDLIVTVVNRNFFRLIHNIHGRH 98


>02_02_0735 -
           13504360-13504516,13504682-13504797,13505030-13505188,
           13505514-13505571,13505863-13505979,13506061-13506123,
           13506348-13506532
          Length = 284

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 543 YQ*C-AVLLLVYFIYMLIKKKEPNVTFITIRMGT*YTFCG 427
           Y+ C A+ LL+ F Y L KK  P +TF  +       FCG
Sbjct: 44  YRNCIALALLIPFAYFLEKKNRPPLTFSLLAQLFFLAFCG 83


>04_03_0554 - 17075142-17075159,17075788-17076591,17076619-17076719,
            17077095-17077751,17077827-17078768,17078837-17078896,
            17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 228  IRQYRDAEGINDLSPHNPLFQYSLSKINMP 317
            IRQYRDA  +  L     ++ + LSK+++P
Sbjct: 967  IRQYRDARWVTPLEALWRIYGFDLSKLHLP 996


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,247,402
Number of Sequences: 37544
Number of extensions: 310650
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)