Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b08
         (730 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ697726-1|CAG26919.1|  198|Anopheles gambiae putative odorant-b...    24   5.5  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    23   7.3  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   9.7  
AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    23   9.7  

>AJ697726-1|CAG26919.1|  198|Anopheles gambiae putative
           odorant-binding protein OBPjj16 protein.
          Length = 198

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 262 SFIPSASLYCLICTIYKARPTYVYT 188
           SFIP   + CL   ++K+ P   +T
Sbjct: 146 SFIPQGFVNCLYTALFKSCPAATWT 170


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -3

Query: 413 PCLFIIIN*AS*LSFLIEVL---LFHDLMLYLLCQWHVDF*KTILKQR 279
           P L+ II       FL  ++   L H L+L+LL  W V + KT+ K +
Sbjct: 386 PALYTIIT----FPFLFAIMFGDLGHGLILFLLGMWMVLWEKTLDKNK 429


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 687 MYMY*KYLMGYRQFSIN 637
           MYMY  YL+GYR   +N
Sbjct: 361 MYMY--YLLGYRIMQLN 375


>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.
          Length = 187

 Score = 23.0 bits (47), Expect = 9.7
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
 Frame = -1

Query: 625 YVCNKNQTIYLCNCAL-ISLND 563
           Y+C  N T Y C C + I L D
Sbjct: 13  YICLLNPTSYSCACPIGIQLKD 34


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,096
Number of Sequences: 2352
Number of extensions: 14427
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)