Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b08
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   0.73 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    24   1.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    24   1.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   6.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 370 NDNHDA*LIIMNRQGPNFIPTKCVLCT 450
           ND     L+ MNR  P ++ +KC L T
Sbjct: 144 NDASGLNLLPMNRNRPAYLASKCALTT 170


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 499 VNKKKRTKCNIHYHKNGYIIHILW 428
           ++++K +K  I Y  N  I+HILW
Sbjct: 83  ISQQKTSKLKI-YKWNNQILHILW 105


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 499 VNKKKRTKCNIHYHKNGYIIHILW 428
           ++++K +K  I Y  N  I+HILW
Sbjct: 66  ISQQKTSKLKI-YKWNNQILHILW 88


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 424 IPTKCVLCTHSYGNECY 474
           +PT+CV C ++   E Y
Sbjct: 36  LPTECVFCRNNGEEEAY 52


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 140 FFLLVTNLFDKHDLYMCIYICRSC 211
           ++ L  +  DKH+    +Y+C  C
Sbjct: 18  YYSLKRHFQDKHEQSDTLYVCEFC 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,133
Number of Sequences: 438
Number of extensions: 4477
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)