Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b07
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine re...    32   0.59 

>AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein192 protein.
          Length = 343

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
 Frame = -1

Query: 529 IYLF*LLITSEMRVHCNFVITSIYILLTLYRLF*AIKSGILV-NFIPMCLAYSYLQKQ*S 353
           IY   +L+ SE   + +  I+ +YI L L   F  I  G L+ N +     +    K   
Sbjct: 182 IYEAPILVLSESLTY-HATISVVYIFLVLIESF--IFVGYLIFNIVKQMKEHKMSPKTFE 238

Query: 352 TKKRFSLALLMPFNIINICGSIQIQFRKYYKLTNYY 245
            +K+F + LL+  +I  IC    + +  +  L NYY
Sbjct: 239 LQKKFIITLLIQVSIPMICFIFTLIYIGFAYLINYY 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,655,843
Number of Sequences: 27780
Number of extensions: 356845
Number of successful extensions: 742
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)