Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13b04
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 36 0.009
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 32 0.085
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 32 0.11
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 31 0.26
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 30 0.45
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.60
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 29 0.60
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 1.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 28 1.8
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 2.4
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.4
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 3.2
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 27 3.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 3.2
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 27 4.2
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 27 4.2
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 27 4.2
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 4.2
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 5.6
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 5.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.6
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 26 5.6
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 26 5.6
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 7.4
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 7.4
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 26 7.4
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 7.4
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 26 7.4
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 25 9.7
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 35.5 bits (78), Expect = 0.009
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = -1
Query: 473 CIACEKAIHTRCLNQYLEKIKK--WPC--CKLDFSPDQLKQLNESQRMTQITQTFEDTQS 306
C CE A HT CL+ L I K W C CK + S ++ + + + ++ E +
Sbjct: 286 CDGCEAAYHTSCLDPPLTSIPKEDWYCDACKFNISDYDPRKGFKWKLSSLKERSAEIFNT 345
Query: 305 IEERSENSTASNVENDNTE 249
+ ER+ +S +N+ D+ E
Sbjct: 346 LGERNSSSKLTNLTEDDIE 364
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 32.3 bits (70), Expect = 0.085
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -1
Query: 512 CYICKKNVFWGAN--CIACEKAIHTRCLNQ 429
CYIC ++V WG+ C C + H+RCL +
Sbjct: 711 CYICSESV-WGSELRCFHCSISCHSRCLKR 739
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -1
Query: 392 LDFSPDQLKQLNESQRMTQITQTFED-TQSIEERSENSTASNVENDNTEEMERSQN 228
++FS D LK +NE + M QI +TF+ + +E+S + + ++TEE E N
Sbjct: 838 INFSDDDLKLMNEEEIMEQI-ETFKAWSMKFKEKSSGNPSYFFSPEDTEEKELWNN 892
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/58 (25%), Positives = 34/58 (58%)
Frame = -1
Query: 377 DQLKQLNESQRMTQITQTFEDTQSIEERSENSTASNVENDNTEEMERSQNTDNIRRLS 204
D+L+Q N+ Q + I ++++ +EE++E+ + NV + E ++NT ++ L+
Sbjct: 76 DKLQQENKDQELKNIEESYK---KLEEKTEHLSDDNVSLEKRVEYLETENTKLVKTLN 130
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 29.9 bits (64), Expect = 0.45
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = -1
Query: 329 QTFEDTQSIEERSENSTASNVENDNTEEMERSQNTDNIRRLSRKRKRE*IYV 174
Q+ E ++S EE S S + E+++ + R + TD+ ++ SRK++ I++
Sbjct: 234 QSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKK-SRKKRAPHIHI 284
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = -1
Query: 461 EKAIHTRCLNQYLEKI-KKWPCCKLDFSPDQLKQLNESQRMTQITQTFEDTQSIEERSEN 285
E I R +++ + + K+ P +F P +L +LNE++ + + +E+ + +++ + +
Sbjct: 366 EDLIKNRIISKTFDDVPKRAPVAVTEFRPSELFELNENKSQRSLAEEYEE-EFLKKSNAD 424
Query: 284 STASNVENDNTEEME 240
+ S + +E E
Sbjct: 425 TYKSEADKKKEKEHE 439
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 29.5 bits (63), Expect = 0.60
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = -1
Query: 395 KLDFSPDQLKQLNESQRMTQITQTFEDTQ-SIEERSENSTASNVENDNTEEMERSQNTDN 219
KLD ++ + + + + Q EDT+ + E+S ++ N + + ++ ++S+N
Sbjct: 82 KLDKGDEETNETQQEDLLNTLLQQMEDTKITTAEKSSVQSSLNTKENTPQQPKKSRNRQK 141
Query: 218 IRRLSRKR 195
RL R++
Sbjct: 142 -ERLERRK 148
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 368 KQLNESQRMTQITQTFEDTQSIEERSENSTASNVENDNTEEMERSQNTDNIR 213
KQL + Q ++ I QT EDT E S N + E E++E N++
Sbjct: 4366 KQLQDGQDISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELPDYNVK 4417
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/52 (25%), Positives = 31/52 (59%)
Frame = -1
Query: 356 ESQRMTQITQTFEDTQSIEERSENSTASNVENDNTEEMERSQNTDNIRRLSR 201
+S ++T ++ +S EE+S++ T+++V +NT ++ N DN+ + +
Sbjct: 976 DSAQLTSEPKSESLPKSPEEKSDD-TSNDVTTENTNDINGDSNMDNVATVDK 1026
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = -1
Query: 386 FSPDQLKQLNESQRMTQITQTFEDTQSIEE-RSENSTASNVENDNTEEMERSQNTDNIRR 210
FSP+ + + + ++ E+ +S E SE S +S+ E+DN+E+ +RS +R
Sbjct: 514 FSPEIREPSLTKKTAVSMQESKEEGRSDESSESEESGSSSDESDNSEKEDRSNPIPVEKR 573
Query: 209 ----LSRKRKRE 186
L+ K+KR+
Sbjct: 574 ASTVLNTKKKRK 585
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 764 LDYFRLLIEEIMSI--DVREITGIHAINLVNKMGQKISMLQAENLL 633
LD R IE+ +S+ DVR+ H + + NK+ ++I L +N L
Sbjct: 683 LDLLRKQIEDSISLHRDVRDSKDAHILKVSNKLRKQILHLVEQNCL 728
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 3.2
Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 2/113 (1%)
Frame = -1
Query: 551 DYFEKYMPDVMKDCYICKKNVFWGANCIACEKAIHTRCL-NQYLEKIKKWP-CCKLDFSP 378
D ++ P++ C +CKK C+K C+ L+ + P C + D
Sbjct: 269 DVYKMQPPNISLACTLCKKLARNACRTPCCDKLFCEECIQTALLDSDFECPNCHRKDVLL 328
Query: 377 DQLKQLNESQRMTQITQTFEDTQSIEERSENSTASNVENDNTEEMERSQNTDN 219
D L + Q+ +I + + S+NS +DN M + ++
Sbjct: 329 DTLNP--DYQKQREIEAVVKSV--LGSNSKNSDKVGTSDDNNTPMSEKRKRED 377
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 317 DTQSIEERSENSTASNVENDNTEEMER 237
DT IEE+S+ SN + + EE+ER
Sbjct: 698 DTDEIEEQSDWEMISNQDASDNEELER 724
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1
Query: 332 TQTFEDTQSIEERSENSTASNVENDNTEEMER--SQNTDNIRRLSRKRKRE 186
T T ED Q RS++ + D T + ++N DN+R +SR +RE
Sbjct: 1406 TPTNEDIQ----RSDSKLREDQSRDRTPQSRSFTNENNDNLRSVSRHTRRE 1452
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 315 VFKGLSYLSHSLAFVKLFQLIWTEVEFTTRPFF 413
VF+ L+ LS + F+ L ++T+V+ +P F
Sbjct: 319 VFRVLAQLSENFIFIYLGMSLFTQVDLVYKPIF 351
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = -1
Query: 512 CYICKKNVFWGANCIACEKAIHTRCLNQYLEKIKKWPCCKLDFSPDQLKQLNESQRMTQI 333
C IC + F +C + C+ YL ++ P C +P+Q +L ++ + +I
Sbjct: 29 CLICHE-YFRAPLITSCSHTFCSFCIRDYL---REHPMCPACRAPEQESRLRKNTILEEI 84
Query: 332 TQTFE 318
++F+
Sbjct: 85 LESFK 89
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -1
Query: 512 CYICKKNVFWG--ANCIACEKAIHTRCLNQYLEKIK-KWPCCKLDF 384
C IC + + + CE HT+C++ ++ +K P C D+
Sbjct: 205 CIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNEDY 250
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 335 ITQTFEDTQSIEERSENSTASNVENDNTEEMERSQNTDN 219
I + T EERS A++ END+ + + N +N
Sbjct: 703 IAMSIRQTNVYEERSLGIYAADTENDDDNNINNNNNDNN 741
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = -1
Query: 383 SPDQLKQLNESQRMTQITQTFEDTQSIEERSENSTASNVENDNTEEMERSQNTDNIRRLS 204
S D + N++ ++ + E S NS +S+ E+D+ +E + Q + +
Sbjct: 121 SDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDSEDETQ--QLLRELENIK 178
Query: 203 RKRKRE 186
++RKRE
Sbjct: 179 QERKRE 184
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 473 CIACEKAIHTRCLNQYLEKIKKWPC 399
C C+ A HT CLN I+++ C
Sbjct: 140 CDGCDDAYHTYCLNMDAVPIEEFYC 164
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -1
Query: 377 DQLKQLNESQRMTQITQTFEDTQSIEERSENSTASNVENDNTEEMERSQNTDN 219
+ + + E + ++ E SI +N END+ EE+ER +N
Sbjct: 562 ESITERKEEAPVISSSEKIESGTSISTSDTKGGLANFENDSLEELERLIQQNN 614
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/56 (21%), Positives = 26/56 (46%)
Frame = -1
Query: 362 LNESQRMTQITQTFEDTQSIEERSENSTASNVENDNTEEMERSQNTDNIRRLSRKR 195
+NE+ + + + + IE +++ A +ENDNT + N + L + +
Sbjct: 725 VNEAYSLLRQSIIHVERDDIEVEEDDAEAQELENDNTNTTNGNDNVSSEEALQKPK 780
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -1
Query: 596 QNKYRLGVRTINEFEDYFEKYMP-DVMKDCYICKKNVFWGANCIACEKAIHTRCLNQYLE 420
+ K LGV + D EK +VM KK + GAN I K I CL +E
Sbjct: 248 KTKMALGVHVTIDDPDQLEKIREREVMITLERVKKILNAGANVILTTKGIDDLCLKSIIE 307
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = -1
Query: 434 NQYLEKIKKWPCCKLDFSPDQLKQLNESQRMTQITQTFEDTQSIEERSENSTASNVENDN 255
+Q LEK+ W D + ++ + + + +++ I + E+ +S+EE S +++ +N+N
Sbjct: 490 DQKLEKMGGWMKKLQDENSEKTETIAQLEQI--IEELHEELRSLEEESIKESSATQQNEN 547
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 512 NLSLHQACISQNNLQIHLWFSHLSGIYFVSSLSSTFYTI 628
NL ++CI+ +++ W S L G+ F S L + FY +
Sbjct: 561 NLLCVRSCIAIDSIS---WISSLQGVKFRSKLMAYFYPL 596
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/56 (21%), Positives = 25/56 (44%)
Frame = -1
Query: 536 YMPDVMKDCYICKKNVFWGANCIACEKAIHTRCLNQYLEKIKKWPCCKLDFSPDQL 369
++P+ + C +C + + A C C+N + K + P C+ SP ++
Sbjct: 248 FIPEGNRKCSLCMEFIHCPA-ATECGHIFCWSCINGWTSKKSECPLCRAFSSPSKI 302
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 641 NLLAKWCKMYYLEKIQNKYRLGVRTINEFEDYF 543
+LLAK + Y EKI K L + T+N F D F
Sbjct: 605 SLLAK--SLVYGEKILGKPNLSLHTLNHFLDKF 635
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 305 IEERSENSTASNVENDNTEEMERSQNTDNIRRLSRKRKRE 186
+ E S + S TE SQN D+ +R RK++R+
Sbjct: 22 VSEISVSDEESAQPTTITENFTASQNNDSAKREKRKKQRQ 61
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 533 CISQNNLQIHLWFSHLSGIYFVSSLSST 616
CI N +QI++W+ I+F L T
Sbjct: 334 CILPNQIQIYVWYGASISIFFALILLRT 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,864
Number of Sequences: 5004
Number of extensions: 64454
Number of successful extensions: 284
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -