Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b04
         (815 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    34   0.006
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    25   2.8  
AY745234-1|AAU93513.1|   96|Anopheles gambiae thioredoxin-depend...    25   2.8  
AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding pr...    24   4.9  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 33.9 bits (74), Expect = 0.006
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 374  QLKQLNESQRMTQITQTFED--TQSIEERSENSTASNVENDNTEEME 240
            +L+  NES+    +    ED    ++E   EN  A+NVEN N +E++
Sbjct: 1312 ELENANESEVAANVENQREDEVAANVENAKENEVAANVENQNEDEVQ 1358


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 446 CE*LFHMLCS*PPKKHFSYKCNNLSLHQACISQNNL 553
           C+  FH  C   P +      +N+ LH +CI   N+
Sbjct: 35  CDATFHRGCCKLPPELIDAVLSNVDLHWSCIGCTNM 70


>AY745234-1|AAU93513.1|   96|Anopheles gambiae thioredoxin-dependent
           peroxidase protein.
          Length = 96

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 123 GVLLVGYCISEFSAVVTHINLFSLPLSRETSYVICILTSFHF 248
           G+ L G  I + + VV  I +  LP+ R     + ++ +F F
Sbjct: 39  GISLRGLFIIDPAGVVRQITINDLPVGRSVDETLRLIKAFQF 80


>AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding
           protein AgamOBP50 protein.
          Length = 166

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 440 CLNQYLEKIKKWPCCKLD 387
           CL+ +L+ IK   CC+L+
Sbjct: 15  CLSPFLQSIKVASCCQLE 32


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,309
Number of Sequences: 2352
Number of extensions: 14334
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)