Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b04
         (815 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.84 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   7.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   7.8  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 452 IHTRCLNQYLEKIKKWPCCKLDFSPDQLKQ 363
           IH+R L   L+ I +W     DF  D+ +Q
Sbjct: 20  IHSRNLTNSLKVIYEWKYIDYDFGSDEKRQ 49


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 791 IPKIFXAKELDYFRLLIEEIMSIDVREITGIH 696
           +PK+  A  LD+F L+        + E  G+H
Sbjct: 298 LPKVRYATALDWFLLMSFGYCIATLLEFAGVH 329


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 57  GYGDFVPVDQYDVAVVAF 110
           G+GDF PV  +    +AF
Sbjct: 269 GFGDFQPVHVHKQTAIAF 286


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 57  GYGDFVPVDQYDVAVVAF 110
           G+GDF PV  +    +AF
Sbjct: 269 GFGDFQPVHVHKQTAIAF 286


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -1

Query: 320 EDTQSIEERSENSTASNVENDNTEEMERSQNTDN 219
           ++ Q+   +++N    N +NDN      +   DN
Sbjct: 502 DNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDN 535


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 384 EVEFTTRPFFYFF*VLIKAPSVNS 455
           E+    RP FY F +++    +NS
Sbjct: 206 EIRLRRRPMFYVFNLILPCILINS 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,751
Number of Sequences: 438
Number of extensions: 4296
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)