Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13b01
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439           63   3e-10
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899...    39   0.006
07_03_1181 + 24606407-24606480,24607060-24608752                       37   0.023
03_03_0256 + 15898702-15900420                                         36   0.041
06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209...    35   0.095
05_03_0185 + 9348559-9348958,9349560-9349687,9349782-9349808,935...    34   0.13 
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    33   0.29 
08_02_0130 - 12900202-12900277,12901457-12901536,12901654-129017...    33   0.38 
08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781...    31   0.88 
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465...    30   2.0  
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331...    30   2.0  
10_08_1041 + 22512528-22512539,22512603-22512793,22512870-225130...    30   2.7  
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081...    30   2.7  
06_03_0967 - 26395537-26396590,26400918-26401111                       30   2.7  
01_06_0499 + 29823578-29823754,29823882-29824002,29825103-298252...    29   3.6  
07_03_1679 + 28616006-28616137,28616651-28616842,28616945-286171...    29   4.7  
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648...    29   4.7  
07_03_1680 + 28620244-28620480,28620556-28620732,28620819-286209...    29   6.2  
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347...    29   6.2  

>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
          Length = 1093

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 23/202 (11%)
 Frame = -3

Query: 837 HHKTVTTLRLA----SNNSRLMSASLDRHVKIYDVSTFKVVHNIDFPNAILSMAISEHDD 670
           H KTV  L LA    +  +RL+SA  D +VK +D    K+ H++ +P  +LS+A S    
Sbjct: 265 HVKTVMALALAKMTNTGETRLLSAGSDGYVKSFDYGELKLTHSMRYPKELLSLACSPCGT 324

Query: 669 ILTVGMIDGIISI--RKREEPVRQSEKRKNL---LKFIPDHTSQTK-------------- 547
           +L  G   G I +  RK++      E+ K +   L + P    + +              
Sbjct: 325 VLVAGSSKGTIYMGRRKKKSTGEDEEEGKGVGGELDWAPTKPEKRRLAPSNYRYFLRGQN 384

Query: 546 ADTVEVANEVKINKKQKLPDCDVLIRKMQFSKALTVVLRPYISVKYPEKTTAVIQELLRR 367
           A   E    ++  KK K+ + D L+RK +   AL   L    +   P    AV++EL+ R
Sbjct: 385 AKAKEGDLVIEKPKKVKVAEHDKLLRKFRHKDALVSAL----ARNNPRSIVAVMEELVSR 440

Query: 366 EVLRVAIENLEEKFIGLLLKFL 301
             L   IENL+ + + LLL FL
Sbjct: 441 RKLVRCIENLDTEELVLLLLFL 462


>05_06_0102 -
           25589011-25589181,25589269-25589496,25589589-25589933,
           25590406-25590777,25590957-25591049,25591150-25591401,
           25592019-25593224
          Length = 888

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 846 YSQHHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFK--VVHNIDFPNAILSMAISEHD 673
           +S+H   VT +   +NN  L+SASLD  ++ +D+  ++         P   +S+   +  
Sbjct: 415 FSEHTNAVTAVHFMANNHSLLSASLDGTIRAWDLFRYRNFKTFTTALPRQFVSLTADQSG 474

Query: 672 DILTVGMID 646
           +++  G +D
Sbjct: 475 EVICAGTLD 483


>07_03_1181 + 24606407-24606480,24607060-24608752
          Length = 588

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -3

Query: 825 VTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNIDFPNAI--LSMAISEHDDILTVGM 652
           V +L  A   ++L+S+  D HV  +D+ T K +H      ++  +S+  S    +   G 
Sbjct: 419 VRSLAFADGGNQLLSSGGDGHVYHWDLRTRKCIHKGTDEGSLAGISLCTSPDSSLFATGS 478

Query: 651 IDGIISIRKREE 616
             GI+++ KR++
Sbjct: 479 TSGIVNVYKRDD 490


>03_03_0256 + 15898702-15900420
          Length = 572

 Score = 35.9 bits (79), Expect = 0.041
 Identities = 20/88 (22%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = -3

Query: 846 YSQHHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNIDFP--NAILSMAISEHD 673
           Y QH   V T+    NN R +++S D+ +++++     V+  I  P  +++ S+++  + 
Sbjct: 408 YDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNS 467

Query: 672 DILTVGMIDGIISIRKREEPVRQSEKRK 589
           + L    +D  I I   +E  + ++K++
Sbjct: 468 NWLAAQSLDNQILIYSTKERFQLNKKKR 495



 Score = 32.7 bits (71), Expect = 0.38
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = -3

Query: 846 YSQHHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNIDFPNAILSMAISEHDD- 670
           Y  H K V  +  +++ ++ +SA  DR+++ +D  T +V+           + ++  +D 
Sbjct: 322 YMGHSKAVRDISFSNDGTKFLSAGYDRNIQYWDTETGQVISTFSTGKVPYVVKLNPDEDK 381

Query: 669 --ILTVGMID 646
             +L  GM D
Sbjct: 382 QHVLLAGMSD 391


>06_03_0914 +
           25920277-25920405,25920783-25920810,25920890-25920990,
           25921356-25921479,25921793-25921903,25922222-25922397,
           25922766-25922848,25922935-25923007,25923630-25923695,
           25923776-25923818,25924600-25924739,25924878-25925090,
           25925397-25925481,25925558-25925852,25926855-25927110,
           25927237-25927450,25927701-25927912,25928054-25928203
          Length = 832

 Score = 34.7 bits (76), Expect = 0.095
 Identities = 17/67 (25%), Positives = 37/67 (55%)
 Frame = -3

Query: 846 YSQHHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNIDFPNAILSMAISEHDDI 667
           +  H   VT L  + +   L+S+S+D  ++I+D+S  + +  +    +I S+++S + D+
Sbjct: 483 FEGHTDRVTDLCFSEDGKWLISSSMDGTLRIWDISLARQIDAMHVDVSITSLSMSPNMDV 542

Query: 666 LTVGMID 646
           L    +D
Sbjct: 543 LATTHVD 549


>05_03_0185 +
           9348559-9348958,9349560-9349687,9349782-9349808,
           9350250-9350369,9350474-9350563,9351206-9351292,
           9351410-9351489,9352843-9352918
          Length = 335

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -3

Query: 837 HHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNIDFPNAILSMAISEHDDILTV 658
           H KT+T+L  +++ S  ++ SLD+  K++D  T  ++        + ++ IS   D + +
Sbjct: 199 HQKTITSLSKSADWSHFLTGSLDKSAKLWDTRTLTLIKTYVTERPVNAVDISPLLDHVVI 258

Query: 657 G 655
           G
Sbjct: 259 G 259


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -3

Query: 840 QHHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNIDFPNAILSMAISEHDDILT 661
           +H + V +L  + N   L++A LD+ V I+DV + + V    F   I S+A     + + 
Sbjct: 247 EHEQPVCSLCWSPNGRYLVTAGLDKQVLIWDVKSKQDVERQKFDERICSLAWKPESNAVA 306

Query: 660 VGMIDGIISI 631
           V  + G   I
Sbjct: 307 VIDVTGRFGI 316


>08_02_0130 -
           12900202-12900277,12901457-12901536,12901654-12901740,
           12902475-12902636,12904766-12904855,12904959-12905078,
           12905671-12905798,12905873-12906272
          Length = 380

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -3

Query: 837 HHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVV 727
           H KT+T+L  +++ S  ++ SLD+  K++D  T  ++
Sbjct: 190 HQKTITSLSKSADWSHFLTGSLDKSAKLWDTRTLTLI 226


>08_02_1111 +
           24377268-24377444,24377543-24377630,24378072-24378157,
           24378358-24378511,24378723-24378883,24378964-24379632,
           24379860-24380058,24380188-24380405,24380578-24380755,
           24380859-24381358
          Length = 809

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 837 HHKTVTTLRLASNNSRLMSASLDRHVKIYDV 745
           H+ TVT +  + +N+ L+S S DRH+ ++ +
Sbjct: 610 HNLTVTQMEFSRDNAFLLSVSRDRHLSVFSI 640


>01_06_0923 +
           33044283-33044433,33044826-33045242,33046209-33046538,
           33046806-33046876,33047283-33047357,33047435-33047578,
           33047645-33047816,33047933-33048616,33048711-33048767,
           33048850-33048956,33049485-33049610,33050221-33050295,
           33050387-33050499,33050789-33050905,33051384-33051444,
           33051690-33051763,33052267-33052388,33052472-33052620,
           33053525-33053635,33053946-33054008,33054689-33054722,
           33055253-33055375,33055971-33056033,33056130-33056196,
           33056311-33056356,33056446-33056552,33056923-33056971,
           33057208-33057273,33057544-33057630
          Length = 1286

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 846 YSQHHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNIDFPNA-ILSMAISEHDD 670
           Y  H   + T+R   +   +++   D  VK++D++  K++H+  F +  I  +     + 
Sbjct: 236 YKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFHSGQIRCIDFHPQEF 295

Query: 669 ILTVGMID 646
           +L  G  D
Sbjct: 296 LLATGSAD 303


>01_06_0898 -
           32832665-32832724,32832761-32832815,32832957-32833135,
           32833218-32833328,32833600-32833647,32833810-32833949,
           32834402-32834539,32834660-32834804,32834936-32835002,
           32835226-32835329,32835444-32835647
          Length = 416

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 837 HHKTVTTLRLASNNSRLMSASLDRHVKIYDVS 742
           H K +T    +SNN  + S S+D+ ++++++S
Sbjct: 214 HSKDITDFDFSSNNQYIASCSMDKTMRVWEIS 245


>10_08_1041 +
           22512528-22512539,22512603-22512793,22512870-22513064,
           22513661-22513779,22513923-22514099,22514257-22514360
          Length = 265

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
 Frame = -3

Query: 375 LRREVLRVAIENLEEKFIGLLLKFLISKLGETRFTRTIVDATNVFIDIFEGKINMFSPEN 196
           LR ++ ++ IEN  + F+ +    L+ +       RT+++   +F  I   +   F  E+
Sbjct: 14  LRLDIGKLGIENSRDVFVDVDDTSLLVRAKSDGTLRTLINVKQLFDRIKSSETIWFIDED 73

Query: 195 LYLYKCLFKRVESEIK---VCKSIAELEGAINLIMAGAQVSNT-DVYELNDTIA 46
             +     K+VE E+K   + +S   L   I  ++ G  V    D  ++N+ +A
Sbjct: 74  QLVVN--LKKVEQELKWPDIDESWESLTSGITQLLTGISVHIVGDSTDINEAVA 125


>10_08_0299 -
           16607152-16607322,16607465-16607785,16607870-16608121,
           16608298-16608435,16608544-16608651,16608814-16609014,
           16609109-16609233,16609252-16609321,16609919-16610455
          Length = 640

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = -3

Query: 837 HHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVVHNI--DFPN--AILSMAISEHDD 670
           H + +T ++ +++   L+S S+D  +KI+D+   K    +  D PN  A  ++A S  + 
Sbjct: 367 HTEDITGVKFSTDGQILLSRSMDSTLKIWDLRKMKTPLKVFEDLPNHYAETNVAFSPDEQ 426

Query: 669 ILTVG 655
           ++  G
Sbjct: 427 LIFTG 431


>06_03_0967 - 26395537-26396590,26400918-26401111
          Length = 415

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -3

Query: 837 HHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKVV 727
           H   V  L+  ++ ++++SAS D+ V+++DV T K V
Sbjct: 167 HKNAVLDLQWTTDGTQIISASPDKTVRVWDVETGKQV 203


>01_06_0499 +
           29823578-29823754,29823882-29824002,29825103-29825227,
           29825338-29825432,29825890-29825994,29826103-29826899,
           29827100-29827154,29827930-29828035,29828126-29828268,
           29828816-29829038
          Length = 648

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 3/151 (1%)
 Frame = -3

Query: 759 KIYDVSTFKVVHNIDFPNAILSMAISEHDDILTVGMIDGIISIRKREEPVRQSEKRKNLL 580
           ++  +  F   HN+ F + + S+    H  +LT       +S  +R   +   +    L 
Sbjct: 323 RVPSMKIFDRSHNLSFKDYVSSLEEPIHQKMLTK-----TLSYSERLGMIWPEQPLDILA 377

Query: 579 KFIPDHTS---QTKADTVEVANEVKINKKQKLPDCDVLIRKMQFSKALTVVLRPYISVKY 409
           + +PD T      KA    ++ +         PD D L+       AL    RPY     
Sbjct: 378 QRLPDSTKPFISEKALRSCLSFKSAHGDSNAFPD-DCLVHDFNIKSALVKTKRPYFVRII 436

Query: 408 PEKTTAVIQELLRREVLRVAIENLEEKFIGL 316
            ++   V   +  R  LR  I+NL+   +G+
Sbjct: 437 SKQMVGVFISIWVRRSLRKHIQNLKVSTVGV 467


>07_03_1679 +
           28616006-28616137,28616651-28616842,28616945-28617110,
           28617195-28617586
          Length = 293

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +2

Query: 233 MSMKTLVASTIVLVNLVSPNLEIRNLSSRPINFSSKFSMATLKTSLL 373
           +S K L+ S  VL N  S +  +RN +S    FSS FS A +K + L
Sbjct: 229 LSNKGLLHSDQVLFNGNSTDNTVRNFASNRAAFSSAFSSAMVKMANL 275


>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
            31165816-31167650,31169294-31169424,31169993-31170075,
            31170426-31170680,31171125-31171220,31171695-31171775,
            31171811-31171968,31172434-31172534,31172614-31172629,
            31173390-31173439,31174558-31174588,31175156-31175305,
            31176135-31176173,31176288-31176410,31176496-31176552,
            31176837-31176911,31177003-31177107
          Length = 1496

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
 Frame = -3

Query: 840  QHHKTVTTLRLASNNSRLMSASLDRHVKIYDVSTFKV----VHNIDFPNAILSM 691
            QHH+ V+ +  +    ++++A+LD+ +  +D  T  V    + N+D   A LS+
Sbjct: 1037 QHHEVVSCIEFSQITGQVVTATLDKKLMFWDSQTRNVNPNSIKNLDSDVASLSV 1090


>07_03_1680 +
           28620244-28620480,28620556-28620732,28620819-28620984,
           28621099-28621493
          Length = 324

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 233 MSMKTLVASTIVLVNLVSPNLEIRNLSSRPINFSSKFSMATLKTSLLS 376
           +S K L+ S  VL N  S +  +RN +S    FSS F+ A +K   +S
Sbjct: 259 LSNKGLLHSDQVLFNGGSADNTVRNFASNAAAFSSAFTTAMVKMGNIS 306


>01_06_1303 -
           36132588-36132710,36133879-36134103,36134318-36134713,
           36135352-36135547,36135591-36135740,36135818-36135924,
           36135987-36136094,36136354-36136435,36136436-36136536,
           36136778-36136996,36137455-36137583,36137665-36137742,
           36137816-36137929,36138071-36138230,36139224-36139441
          Length = 801

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -3

Query: 549 KADTVEVANEVKINKKQKLPD-CDVLIRKMQFSKALTVVLRPYISVKYPEKTTAVIQELL 373
           K+ TVE   E+    K+ L   C   +        + V  R   S  Y  +  A ++ELL
Sbjct: 181 KSVTVEEFAEIVYGSKESLESYCAHFLLSRDIVYFVKVESRD--SSVYQPRPPAQVEELL 238

Query: 372 RREVLRVAIENLEEKFIGLL 313
           RR++ + A E   E+F+ L+
Sbjct: 239 RRKLAKEAAEKEMEEFVQLI 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,882,522
Number of Sequences: 37544
Number of extensions: 351128
Number of successful extensions: 867
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)