Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a22
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    27   1.4  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   1.4  
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb...    26   3.3  
SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.3  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   10.0 

>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = -2

Query: 157 AYDRVQVIPDWVMDYWHP-----LEKAHYPEYFKRR 65
           A+D      +W+ DY HP     ++++ YP++  R+
Sbjct: 283 AFDLANYFAEWMADYHHPTHNYLMDRSRYPDFNARK 318


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -2

Query: 319 HQVILRNELDKNKAVCDPKEHRRLLRVAENELFMSQHPIPVAKFARSVGIAG 164
           H+  L  + D N    DPK H  +  V+EN++      +  +    ++ +AG
Sbjct: 822 HKASLSKDTDTNSVTSDPKPHPFVPSVSENKILNRSFSLTRSLKGLALSLAG 873


>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = -2

Query: 463 LVCRSFSNITEMSFAPELRSHSQKVCNFYKRAMRTLEAYHVARYVIRYHQVILR--NELD 290
           + C S SN+T  S  P + ++ + +   ++  +R   A   A   +    V  R  +E  
Sbjct: 514 IFCYSLSNLT-YSELPRVNTYVRAMA--FRPDVRGRLAVATAGNQVYEFDVQSRKLSEWS 570

Query: 289 KNKAVCDPKEHRRLLRVAENELFMSQHP 206
           KN +   PKE  +LL  A    F S+HP
Sbjct: 571 KNNSTNMPKEFSQLLDKAFGAFFDSKHP 598


>SPAC2C4.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 125

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 399 EWLLSSGAKDISVI-LENERQTSTYKV 476
           +W+L+ GAK +S+  +ENE + S +++
Sbjct: 84  DWILNDGAKTLSLCGIENETELSYFEL 110


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 175 GIAGGVAYDRVQVIPDWVMDYWH-PLEKAH 89
           GI  G    R   +  W++D+W+ PL K H
Sbjct: 248 GINAGSFLIRNSEVGTWMLDFWNEPLYKEH 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,494
Number of Sequences: 5004
Number of extensions: 39003
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)