Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a22
         (557 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070784-1|AAL48406.1|  144|Drosophila melanogaster AT12494p pro...   122   2e-28
AE014134-2336|AAF53290.1|  144|Drosophila melanogaster CG9306-PA...   122   2e-28
AE014296-2445|AAF49690.1|  744|Drosophila melanogaster CG3349-PA...    30   1.8  
AY058461-1|AAL13690.1|  432|Drosophila melanogaster GH26069p pro...    29   5.6  
AE014298-2235|AAF48520.1|  432|Drosophila melanogaster CG8509-PA...    29   5.6  
BT016072-1|AAV36957.1|  756|Drosophila melanogaster LP07359p pro...    28   7.4  
AY051474-1|AAK92898.1|  639|Drosophila melanogaster GH13952p pro...    28   7.4  
AE014134-1876|AAF52942.2|  756|Drosophila melanogaster CG5355-PA...    28   7.4  

>AY070784-1|AAL48406.1|  144|Drosophila melanogaster AT12494p
           protein.
          Length = 144

 Score =  122 bits (295), Expect = 2e-28
 Identities = 62/125 (49%), Positives = 82/125 (65%)
 Frame = -2

Query: 406 SHSQKVCNFYKRAMRTLEAYHVARYVIRYHQVILRNELDKNKAVCDPKEHRRLLRVAENE 227
           SH ++VC+ YKRA+R LE+++  R V RY  V LR   D+N++  D  E  RLL   + E
Sbjct: 10  SHKRQVCSLYKRALRNLESWYDRRNVYRYRAVQLRARFDENRSK-DLGEGIRLLACGQRE 68

Query: 226 LFMSQHPIPVAKFARSVGIAGGVAYDRVQVIPDWVMDYWHPLEKAHYPEYFKRRECRKCE 47
           LF ++H  P   FA S   AGG A++R  + PDWV+DYWHPLEKA YPEYF +RE RK E
Sbjct: 69  LFETRHFQP-RNFANS---AGGCAFEREVIPPDWVLDYWHPLEKAQYPEYFAKREQRKKE 124

Query: 46  YIKKW 32
           ++  W
Sbjct: 125 FVTWW 129


>AE014134-2336|AAF53290.1|  144|Drosophila melanogaster CG9306-PA
           protein.
          Length = 144

 Score =  122 bits (295), Expect = 2e-28
 Identities = 62/125 (49%), Positives = 82/125 (65%)
 Frame = -2

Query: 406 SHSQKVCNFYKRAMRTLEAYHVARYVIRYHQVILRNELDKNKAVCDPKEHRRLLRVAENE 227
           SH ++VC+ YKRA+R LE+++  R V RY  V LR   D+N++  D  E  RLL   + E
Sbjct: 10  SHKRQVCSLYKRALRNLESWYDRRNVYRYRAVQLRARFDENRSK-DLGEGIRLLACGQRE 68

Query: 226 LFMSQHPIPVAKFARSVGIAGGVAYDRVQVIPDWVMDYWHPLEKAHYPEYFKRRECRKCE 47
           LF ++H  P   FA S   AGG A++R  + PDWV+DYWHPLEKA YPEYF +RE RK E
Sbjct: 69  LFETRHFQP-RNFANS---AGGCAFEREVIPPDWVLDYWHPLEKAQYPEYFAKREQRKKE 124

Query: 46  YIKKW 32
           ++  W
Sbjct: 125 FVTWW 129


>AE014296-2445|AAF49690.1|  744|Drosophila melanogaster CG3349-PA
           protein.
          Length = 744

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = -2

Query: 448 FSNITEMSFAPELRSHSQKVCNFYKRAMRTLEAYHVARYVIRYHQVILRNELDKNKAVCD 269
           F+NIT +S    ++   Q   +F     +  E        I+ +  + + E DKNK V  
Sbjct: 475 FANITVISMKNGMKFKGQSTSDFAINLKKKSEVRFCTNESIKLNDYLEKIEKDKNKIVAY 534

Query: 268 PKEHRRLLRVAENEL 224
             +   ++R   NEL
Sbjct: 535 YNQQENVVRAHFNEL 549


>AY058461-1|AAL13690.1|  432|Drosophila melanogaster GH26069p
           protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 110 PIIHYPIRYHLNTIVGYTAGNTHRSSKFSHRDRMLTHKQFVFCHSQ*STMFF 265
           P+  Y +     + +G+ A  TH  SK S  +R+   +Q V  +   S MFF
Sbjct: 366 PVSRY-VSMEPESFLGFQASKTHNKSKESEDERLWMMRQLVDENDPNSDMFF 416


>AE014298-2235|AAF48520.1|  432|Drosophila melanogaster CG8509-PA
           protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 110 PIIHYPIRYHLNTIVGYTAGNTHRSSKFSHRDRMLTHKQFVFCHSQ*STMFF 265
           P+  Y +     + +G+ A  TH  SK S  +R+   +Q V  +   S MFF
Sbjct: 366 PVSRY-VSMEPESFLGFQASKTHNKSKESEDERLWMMRQLVDENDPNSDMFF 416


>BT016072-1|AAV36957.1|  756|Drosophila melanogaster LP07359p
           protein.
          Length = 756

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -2

Query: 220 MSQHPIPVAKFARSVGIAGGVAYDRVQVIPDWVMDYWHPLEKAHYPEYFK 71
           ++Q P         VG+   + + +  +   W  DY +P EK H+   +K
Sbjct: 609 INQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWCSDYGNPSEKEHFDNLYK 658


>AY051474-1|AAK92898.1|  639|Drosophila melanogaster GH13952p
           protein.
          Length = 639

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -2

Query: 220 MSQHPIPVAKFARSVGIAGGVAYDRVQVIPDWVMDYWHPLEKAHYPEYFK 71
           ++Q P         VG+   + + +  +   W  DY +P EK H+   +K
Sbjct: 570 INQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWCSDYGNPSEKEHFDNLYK 619


>AE014134-1876|AAF52942.2|  756|Drosophila melanogaster CG5355-PA
           protein.
          Length = 756

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -2

Query: 220 MSQHPIPVAKFARSVGIAGGVAYDRVQVIPDWVMDYWHPLEKAHYPEYFK 71
           ++Q P         VG+   + + +  +   W  DY +P EK H+   +K
Sbjct: 609 INQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWCSDYGNPSEKEHFDNLYK 658


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,990,701
Number of Sequences: 53049
Number of extensions: 400597
Number of successful extensions: 1222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2151905496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)