Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13a22
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical pr...    66   2e-11
AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical ...    29   1.7  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U41279-1|AAQ81282.1|   78|Caenorhabditis elegans Insulin related...    28   4.0  
AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical...    27   9.1  

>U41534-5|AAB47597.1|  163|Caenorhabditis elegans Hypothetical
           protein C16A3.5 protein.
          Length = 163

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
 Frame = -2

Query: 406 SHSQKVCNFYKRAMRTLEAYHVARYV-IRYHQVILRNELDKNKAVCDPKEHRRLLRVAEN 230
           SH QKV   YKR +R ++ ++    + +R+ + I+R   D N    D ++ + LL     
Sbjct: 13  SHRQKVTRLYKRCLREVDNWYGGNNLEVRFQKCIIRARFDANADEVDTRKSQILLADGCR 72

Query: 229 ELFMSQHPIPVAKFARSVGIAGGVAYDRVQVIPDWVMD--YWHPLEKAHYPEYFKRRECR 56
           +L+  +H  P  +FA      GG +YDR +  PD ++D   W   E+  +P YF  RE R
Sbjct: 73  QLWEKRHFKPF-RFALD---PGGSSYDRERESPDEIVDSDQWTLAEREQFPYYFNTREQR 128

Query: 55  KCEYIKKW 32
           K E +  W
Sbjct: 129 KKELLTHW 136


>AL022270-1|CAB63432.1| 1270|Caenorhabditis elegans Hypothetical
           protein C26G2.1 protein.
          Length = 1270

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 205 IPVAKFARSVGIAGGVAYDRVQV 137
           +PVA++A++ GI GGVA  R +V
Sbjct: 875 LPVARYAKTAGILGGVAKARCKV 897


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 113  IIHYPIRYHLNTIVGYTAGNTHRSSKF 193
            I +YP++ ++  IVG   GN HR  +F
Sbjct: 1585 INYYPVQANIRAIVGNVDGNFHRMQEF 1611


>U41279-1|AAQ81282.1|   78|Caenorhabditis elegans Insulin related
           protein 38 protein.
          Length = 78

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 478 LTL*VLVCRSFSNITEMSFAPELRSHSQKVCNFYKRAMRTL 356
           + L +LVC +F+ IT  SF P+ +S    V ++ K   R +
Sbjct: 1   MNLFLLVCIAFAIITVTSFTPDEKSQRSHVFSYKKHCGRRI 41


>AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical
           protein C54F6.3 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 77  IFRIMCLF*RMPIIHYPI-RYHLNTIVGYTAGNTHRSSKFSHRDRML 214
           IF +  +F R  + H  + +    T+ G TA +TH+SSK    +R +
Sbjct: 226 IFHLANIFKRQGVSHAVVEKVKEETMAGETAHSTHKSSKRVEAERQV 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,045,198
Number of Sequences: 27780
Number of extensions: 212106
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)