Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a21
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 267 6e-72
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 266 1e-71
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 31 1.4
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415 30 2.4
04_04_1146 + 31249488-31249722,31250145-31250236,31251158-312512... 29 5.6
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 29 5.6
02_01_0475 + 3422629-3422695,3422960-3423216 28 7.4
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 9.8
08_02_1410 - 26876243-26876497,26877129-26877239,26877240-268773... 28 9.8
05_04_0084 - 17788077-17789240 28 9.8
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 267 bits (655), Expect = 6e-72
Identities = 129/257 (50%), Positives = 173/257 (67%)
Frame = -1
Query: 795 DYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGV 616
DY AR RL QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG+
Sbjct: 30 DYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGL 86
Query: 615 KVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDV 436
+VGLTNYAAAY TG ++Y VEP D FR LDV
Sbjct: 87 EVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDV 145
Query: 435 GLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYM 256
GL RTTTG RVFGA+KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YM
Sbjct: 146 GLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYM 205
Query: 255 RSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRW 76
RS+ +++ + F+ FS+Y+K G+ AD +EA+YKK H AIRADP+ K KK+ KR+
Sbjct: 206 RSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAIRADPT-MAKSTKKEPATHKRY 264
Query: 75 NKRKLTLAERKNRIKQK 25
N +KLT +RK + ++
Sbjct: 265 NLKKLTYEQRKASLVER 281
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 266 bits (652), Expect = 1e-71
Identities = 128/257 (49%), Positives = 173/257 (67%)
Frame = -1
Query: 795 DYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGV 616
DY AR RL QDKNKYNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG+
Sbjct: 30 DYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGL 86
Query: 615 KVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDV 436
+VGLTNYAAAY TG ++Y VEP D FR LDV
Sbjct: 87 EVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDV 145
Query: 435 GLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYM 256
GL RTTTG RVFGA+KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YM
Sbjct: 146 GLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYM 205
Query: 255 RSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRW 76
RS+ +++ + F+ FS+Y+K G+ AD +E++YKK H AIRADP+ K KK+ KR+
Sbjct: 206 RSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPT-MAKSTKKEPATHKRY 264
Query: 75 NKRKLTLAERKNRIKQK 25
N +KLT +RK + ++
Sbjct: 265 NLKKLTYEQRKASLVER 281
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 120 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 22
KKK+ KK K+K+ NK+K ++K + K+KK
Sbjct: 74 KKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 165 IYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 10
+ KK + + KKK+ KK + K+K+ K+K ++K R KA I
Sbjct: 66 VMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNKAQHI 117
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 120 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 4
KKK+ KK K+K+ K+K ++K + K+KK KR
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
Length = 126
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -1
Query: 174 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 22
+E KKA ++ P KKK+ KK K+K+ K+K E ++ ++Q+K
Sbjct: 40 LELRKKKAKAKVKKKP--KKKKNKKAKKKKKKKKKKKKEEEEEESDVRQQK 88
>04_04_1146 +
31249488-31249722,31250145-31250236,31251158-31251209,
31251377-31251477,31251587-31252020,31252453-31252507,
31252614-31252667,31252774-31253190
Length = 479
Score = 28.7 bits (61), Expect = 5.6
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = -1
Query: 381 VDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS-LEQDDEDSFKRQFSK 205
VDG +VP + G DA ++ A HR + HV ++ L + D F +
Sbjct: 329 VDGDGSVPVESAKADGLDAVARVGVAADHRGIVCDRHVFRIIQHWLHAGEPDPFYDPLND 388
Query: 204 YIKLGVTADAIEAIYKKAHE--AIRAD---PSHKKKELKK 100
Y+ L TA IE ++K + ++R D SH+ E K+
Sbjct: 389 YVIL-PTAFEIEKYHEKHGDITSVREDWEIISHRDDESKR 427
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 195 LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNK 70
LG++ A+EA YK+++E+ A+P KK + +W++
Sbjct: 748 LGLSHYAMEAGYKRSNESTPAEPVPSKKPKVDPVLPASKWSR 789
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = -1
Query: 198 KLGVTADA----IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIK 31
+LG DA ++ + + A+ + KKK+ KK K+K+ K+K ++K + K
Sbjct: 14 RLGTDLDAYGFRVQVVLQLAYTIFGFEEGKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNK 73
Query: 30 QKKA 19
A
Sbjct: 74 LSSA 77
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 179 MLLKPSTRKPMKPSVRIHPTRR 114
++++PS+R P P+ R PTRR
Sbjct: 288 VVMRPSSRPPQPPASRTSPTRR 309
>08_02_1410 -
26876243-26876497,26877129-26877239,26877240-26877324,
26877620-26877672,26878318-26878440,26878514-26878597,
26878708-26878773,26879512-26879584,26879854-26879888,
26879970-26880212
Length = 375
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -1
Query: 753 KYNTPKYRLIVRLSNKDVTCQVAYSRI--EGDHIVCAAYSHEL 631
+YNT +YR + +S K V C+ + + E DH+ A S L
Sbjct: 274 RYNTSRYRELPHISIKCVFCKASVEPMGEESDHVHIIALSDAL 316
>05_04_0084 - 17788077-17789240
Length = 387
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = -1
Query: 159 KKAHEAIRADPSHKKKELKKDSVKQKR----WNKRKLTLAERKNRIKQKKASFIK 7
+ A E + DP K+ +KKD +Q++ W +R+ + ++K + K+ I+
Sbjct: 300 RAAGEKVHDDPKLIKESMKKDKKRQQKHAEQWKERQKMVDKQKKERQSKRTENIR 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,603,036
Number of Sequences: 37544
Number of extensions: 421609
Number of successful extensions: 1240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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