Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13a21
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 295 3e-80
U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical pr... 34 0.10
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 31 0.72
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 31 0.95
Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical pr... 31 1.3
U53332-1|AAK31529.2| 580|Caenorhabditis elegans Hypothetical pr... 30 1.7
DQ178637-1|ABD75716.1| 580|Caenorhabditis elegans F59G1.4 protein. 30 1.7
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 30 2.2
L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily ass... 29 2.9
L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily ass... 29 2.9
Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 29 3.8
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 29 5.1
AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical ... 29 5.1
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical ... 28 6.7
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 28 8.9
U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical... 28 8.9
AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical ... 28 8.9
AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical ... 28 8.9
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 295 bits (723), Expect = 3e-80
Identities = 146/264 (55%), Positives = 181/264 (68%), Gaps = 1/264 (0%)
Frame = -1
Query: 795 DYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGV 616
DYYARKRL VQDKNKYNTPKYRLIVR++NKDV Q+AYS+IEGD +V +AYSHELPRYG+
Sbjct: 29 DYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGL 88
Query: 615 KVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPV-DNGPGAFRCYLD 439
KVGLTNYAAAY+TG ++YNVE D P F+ LD
Sbjct: 89 KVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAP--FKAVLD 146
Query: 438 VGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEY 259
+GLARTTTG+++F MKG DGG+NVPHS RF G+D ESK++NAE HR I G HVA+Y
Sbjct: 147 IGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADY 206
Query: 258 MRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKR 79
M L+++DED +KRQFSK++ G+ AD + A Y+K H AIRAD S K+ K S KR
Sbjct: 207 MTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKKAAKPS---KR 263
Query: 78 WNKRKLTLAERKNRIKQKKASFIK 7
++LT ERK R+ KKA ++
Sbjct: 264 HTAKRLTYDERKQRVADKKALLLQ 287
>U46753-2|AAA85760.1| 894|Caenorhabditis elegans Hypothetical protein
C34F11.5 protein.
Length = 894
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -1
Query: 228 SFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADP--SHKKKELKKDSVKQKRWNKRKLTL 55
+ K++ K +K + EA K+ + IR S KKE +K+ K+K K K
Sbjct: 815 TLKKKMRKKVKQQMLKKMEEAAAKENEKEIRKTKKKSKDKKEGRKEESKEKAHKKSKPKK 874
Query: 54 AERKNRIKQKKASFIKR 4
+ R+ + QKKA K+
Sbjct: 875 SNRRGHMNQKKAKRTKK 891
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 31.5 bits (68), Expect = 0.72
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -1
Query: 489 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 313
N EP++ G F C+L TT+G+R G + L + ++FPG +
Sbjct: 68 NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127
Query: 312 F 310
F
Sbjct: 128 F 128
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 31.1 bits (67), Expect = 0.95
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -1
Query: 177 AIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIK 7
A E + KK E R K+KE +KD K+K K K + K R K+K IK
Sbjct: 354 AEEKVVKKNKEKEREKEKDKEKEKEKDKEKEKEKEKEK-EKDKEKEREKRKSKEKIK 409
>Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical
protein ZC376.8 protein.
Length = 278
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 183 ADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKR--KLTLAERKNRIKQKKASFI 10
ADA++ I +K E +P+ KK KK+ K + K K E+ N+ + KK+
Sbjct: 71 ADAVKKIEEKGEEKKPEEPAKSKKSEKKEKSKNEGSKKEEDKEKEKEKSNKAEDKKSEDP 130
Query: 9 KR 4
K+
Sbjct: 131 KK 132
>U53332-1|AAK31529.2| 580|Caenorhabditis elegans Hypothetical
protein F59G1.4 protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -1
Query: 201 IKLGVTADAIEAIYKKAHEAI---RADPSHKKKELKKDSVKQKRWNKRKLTLAERK 43
I +G++ A+E YKKA + I + D +KKK+ K+ K+K R + L RK
Sbjct: 422 INIGLSDGAVE--YKKAQDEITRKKEDEENKKKKEKEKVEKEKMKALRHIQLTSRK 475
>DQ178637-1|ABD75716.1| 580|Caenorhabditis elegans F59G1.4 protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = -1
Query: 201 IKLGVTADAIEAIYKKAHEAI---RADPSHKKKELKKDSVKQKRWNKRKLTLAERK 43
I +G++ A+E YKKA + I + D +KKK+ K+ K+K R + L RK
Sbjct: 422 INIGLSDGAVE--YKKAQDEITRKKEDEENKKKKEKEKVEKEKMKALRHIQLTSRK 475
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 645 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 758
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 645 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 758
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>L07144-6|AAK21443.1| 834|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform a protein.
Length = 834
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 183 ADAIEAIYKKAH--EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 10
+D + YK +H E +R + K+E K +VKQ W++ K TL ++ + K+ I
Sbjct: 421 SDIHNSFYKVSHDSEVLRCEFETVKEEYNK-TVKQSEWDEMKATLNTLRSMNRSLKSEKI 479
Query: 9 K 7
+
Sbjct: 480 R 480
>L07144-5|AAU20841.1| 837|Caenorhabditis elegans Temporarily
assigned gene nameprotein 84, isoform b protein.
Length = 837
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 183 ADAIEAIYKKAH--EAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFI 10
+D + YK +H E +R + K+E K +VKQ W++ K TL ++ + K+ I
Sbjct: 421 SDIHNSFYKVSHDSEVLRCEFETVKEEYNK-TVKQSEWDEMKATLNTLRSMNRSLKSEKI 479
Query: 9 K 7
+
Sbjct: 480 R 480
>Z48783-4|CAA88698.1| 359|Caenorhabditis elegans Hypothetical
protein F33H1.3 protein.
Length = 359
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -1
Query: 237 DEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLT 58
D ++ +KY L T + A+ ++ + P H KK V NKR++T
Sbjct: 35 DRQQIRQAMAKYCNLDETTSKLLALERQIL-GLDPQPFHIDVLRKKQKVLTDSINKRRMT 93
Query: 57 LAERKNRIKQKK 22
L + K + KK
Sbjct: 94 LQQGKEDAELKK 105
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = -1
Query: 126 SHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKR 4
S +KK+L+K+ ++ + +KRK +ER+ + + K+ + K+
Sbjct: 70 SRRKKKLRKEKSRKSQRSKRKKRESERRKKERSKRIARSKK 110
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Frame = -1
Query: 357 HSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEY---MRSLEQDDEDSFKRQFSKYIKLGV 187
H++ F D + K A V R G V EY M+ + +D + + K K+ +
Sbjct: 474 HAVTYFTDADMKYIKSIATVIRQS--GFDVPEYLMEMKKVSRDRKKDMLKHAPKRHKIAI 531
Query: 186 TADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKN 40
+ + K +A + + K E + +K+ K+KL KN
Sbjct: 532 VKEQVIKKKKMLAKAAAEEKAKNKTETQTAEKPEKKIKKKKLIKKNNKN 580
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 132 DPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 22
D +KKE KKD ++K+ K++ E+K K++K
Sbjct: 160 DKDDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEK 196
>AF000299-1|AAC47980.1| 210|Caenorhabditis elegans Hypothetical
protein E03H12.5 protein.
Length = 210
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -1
Query: 159 KKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 22
+K E + D +KK+ KKD K+K +K + +++ + K++K
Sbjct: 124 EKKDEEKKDDKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKKSKREK 169
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
protein K10G4.5 protein.
Length = 1251
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 750 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 631
YN P+YR +++L K C+ + GD++ +CA + EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588
>AF043692-2|AAB97531.1| 253|Caenorhabditis elegans Hypothetical
protein C17F3.3 protein.
Length = 253
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = -1
Query: 264 EYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQ 85
E + E+ +D K+ K K + + I K + +++ KK E K+D K+
Sbjct: 71 EEKKEEEKKADDEKKKTEEKDDKKSKKTEEKDKISVKKTQETKSERKDKKDEKKEDEKKE 130
Query: 84 KRWNKRKLTLAERKNRIKQKK 22
+ K K ++K+ +K KK
Sbjct: 131 ESKEKSK-DEEKKKDEVKDKK 150
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 603 SDQPSHHNVATHVNKQRTQYGHLQSESRP 689
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 603 SDQPSHHNVATHVNKQRTQYGHLQSESRP 689
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 603 SDQPSHHNVATHVNKQRTQYGHLQSESRP 689
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>U97006-5|AAC47967.1| 222|Caenorhabditis elegans Hypothetical
protein C13F10.7 protein.
Length = 222
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 120 KKKELKKDSVKQKRWNKRKLTLAERKNRIKQKK 22
K+K+LKK + K+K+ +KL ERK K+K+
Sbjct: 131 KEKKLKKKAKKEKK-KAKKLEKKERKKERKEKR 162
>AL110500-21|CAI79283.1| 197|Caenorhabditis elegans Hypothetical
protein Y87G2A.20 protein.
Length = 197
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Frame = -1
Query: 159 KKAHEAIRADPSHKKKELKKDSVKQKR--WNKRKLTLAERK-NRIKQKKAS 16
KK E +AD + KK+ KKD+ K+K+ +K+K A++K + KQ+ AS
Sbjct: 53 KKRKERKKADKA--KKKTKKDAAKRKKKSKDKKKKQKAQKKAEKPKQQPAS 101
>AL110471-2|CAB63306.1| 479|Caenorhabditis elegans Hypothetical
protein T06D10.2 protein.
Length = 479
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = -1
Query: 255 RSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRW 76
+ LE+D + KR+ ++ K D E + K R +KKE K+ ++K+
Sbjct: 142 KKLEEDKKKEEKRKEAEEKK---KKDEEEKMKKDEERNKRKKEEEEKKEAKRREDEEKKE 198
Query: 75 NKRK--LTLAERKNRIKQKKASFIKRL 1
KRK + ERK R A F ++
Sbjct: 199 AKRKEEEAIEERKRRQSALFAKFFSKV 225
>AF125951-3|AAY86273.1| 244|Caenorhabditis elegans Hypothetical
protein D2063.4 protein.
Length = 244
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +1
Query: 160 VDGFNSICSDS*FYVLAELSLERILIILFK--TSHVFSNMQTKDVSPVYFSIELF 318
VDGF ++CS S V + L ++++ +L + +HV ++ ++++ + IE++
Sbjct: 53 VDGFRNVCSGSDLSVRSNLDVKQLSELLKEDPCTHVAGDVVIENLTDIAIPIEVY 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,742,377
Number of Sequences: 27780
Number of extensions: 375680
Number of successful extensions: 1437
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -